Detailed information NTG1018931

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: AB0R71_RS08360
• Genome accession: NZ_CP160210
• Coordinates: 1648196..1648975 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain JM907
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1643196..1653975

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB0R71_RS08340 (AB0R71_08350)	trmFO	1643883..1645190 (+)	1308	WP_032871468.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
AB0R71_RS08345 (AB0R71_08355)	xerC	1645260..1646177 (+)	918	WP_032871470.1	tyrosine recombinase XerC	-
AB0R71_RS08350 (AB0R71_08360)	hslV	1646193..1646738 (+)	546	WP_014417767.1	ATP-dependent protease subunit HslV	-
AB0R71_RS08355 (AB0R71_08365)	hslU	1646755..1648158 (+)	1404	WP_007409775.1	HslU--HslV peptidase ATPase subunit	-
AB0R71_RS08360 (AB0R71_08370)	codY	1648196..1648975 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
AB0R71_RS08365 (AB0R71_08375)	flgB	1649329..1649718 (+)	390	WP_156735048.1	flagellar basal body rod protein FlgB	-
AB0R71_RS08370 (AB0R71_08380)	flgC	1649718..1650170 (+)	453	WP_015239851.1	flagellar basal body rod protein FlgC	-
AB0R71_RS08375 (AB0R71_08385)	fliE	1650181..1650501 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
AB0R71_RS08380 (AB0R71_08390)	fliF	1650544..1652154 (+)	1611	WP_076424137.1	flagellar basal-body MS-ring/collar protein FliF	-
AB0R71_RS08385 (AB0R71_08395)	fliG	1652167..1653183 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
AB0R71_RS08390 (AB0R71_08400)	fliH	1653176..1653931 (+)	756	WP_015239852.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1018931 AB0R71_RS08360 WP_003154263.1 1648196..1648975(+) (codY) [Bacillus velezensis strain JM907]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1018931 AB0R71_RS08360 WP_003154263.1 1648196..1648975(+) (codY) [Bacillus velezensis strain JM907]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACACTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471