Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DQL23_RS02000 Genome accession   NZ_LS483341
Coordinates   436863..437651 (+) Length   262 a.a.
NCBI ID   WP_060553039.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC7865     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 431863..442651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL23_RS01990 (NCTC7865_00395) - 432329..433543 (+) 1215 WP_008808439.1 pyridoxal phosphate-dependent aminotransferase -
  DQL23_RS01995 (NCTC7865_00396) - 433920..436580 (+) 2661 WP_060553040.1 SEC10/PgrA surface exclusion domain-containing protein -
  DQL23_RS02000 (NCTC7865_00397) codY 436863..437651 (+) 789 WP_060553039.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DQL23_RS02005 - 437651..438208 (+) 558 WP_045505674.1 cysteine hydrolase family protein -
  DQL23_RS02010 (NCTC7865_00399) aspS 438610..440346 (+) 1737 WP_060553038.1 aspartate--tRNA ligase -
  DQL23_RS02015 (NCTC7865_00400) gatC 440549..440851 (+) 303 WP_005591696.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  DQL23_RS02020 (NCTC7865_00401) gatA 440851..442317 (+) 1467 WP_046165064.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29800.12 Da        Isoelectric Point: 5.4646

>NTDB_id=1018731 DQL23_RS02000 WP_060553039.1 436863..437651(+) (codY) [Streptococcus gordonii strain NCTC7865]
MAHLLEKTRKITSILKRSEEQLQEELPYNDITRQLAEIMDCNACIVNSKGRLLGYFMRYKTNNDRVEAFYQTKMFPDDYI
RSANLIYDTEANLPVEHELSIFPVETQSDFPDGLTTIAPIHVSGIRLGSLIIWRNDKKFDNDDLVLVEISSTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGHLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPDVFEEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=1018731 DQL23_RS02000 WP_060553039.1 436863..437651(+) (codY) [Streptococcus gordonii strain NCTC7865]
ATGGCACATTTATTAGAAAAAACAAGAAAAATTACATCTATTTTGAAGCGCTCTGAAGAGCAACTTCAAGAAGAGTTGCC
ATACAATGACATTACAAGACAGTTGGCAGAAATTATGGACTGTAATGCTTGTATTGTTAATAGCAAGGGGCGTTTGTTGG
GTTACTTTATGCGCTACAAAACAAATAATGACCGTGTAGAGGCCTTCTACCAAACTAAAATGTTCCCGGATGATTATATT
CGTTCTGCTAATTTAATTTACGATACAGAAGCTAATTTGCCAGTTGAGCATGAATTATCCATCTTTCCGGTTGAGACACA
GTCGGATTTTCCAGATGGTTTGACAACTATTGCACCTATTCATGTTTCAGGTATTCGTTTGGGGTCTTTGATTATTTGGC
GAAATGACAAAAAATTTGATAATGATGATTTGGTCTTAGTTGAAATTTCAAGTACCGTTGTGGGCATTCAGTTATTGAAT
TTCCAAAGAGAAGAAGATGAAAAGAATATCCGTCGTCGTACAGCAGTGACAATGGCAGTAAATACTTTGTCTTATTCAGA
ATTACGGGCTGTTTCAGCTATCCTAGGAGAGCTAAATGGGAATGAAGGCCACTTGACAGCTTCTGTCATTGCTGACCGTA
TTGGAATTACCCGTTCGGTGATTGTCAATGCATTGCGTAAGTTAGAGAGTGCTGGGATCATTGAGAGTCGTTCTTTGGGA
ATGAAGGGGACCTATCTGAAAGTGTTGATTCCAGATGTTTTTGAGGAAATTAAAAAGAGGGACTACTGA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

62.214

100

0.622
  codY Bacillus subtilis subsp. subtilis str. 168

47.967

93.893

0.45