Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   DQL34_RS10840 Genome accession   NZ_LS483339
Coordinates   2039298..2040566 (-) Length   422 a.a.
NCBI ID   WP_084826190.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain NCTC12958     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2034298..2045566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL34_RS10810 (NCTC12958_02289) - 2035583..2036095 (-) 513 WP_014608793.1 helix-turn-helix domain-containing protein -
  DQL34_RS12560 - 2036310..2036492 (+) 183 WP_024704268.1 hypothetical protein -
  DQL34_RS10815 (NCTC12958_02290) - 2036538..2037515 (+) 978 WP_084829163.1 replication initiation protein -
  DQL34_RS10820 (NCTC12958_02291) - 2037527..2037715 (+) 189 WP_000369785.1 DUF3173 domain-containing protein -
  DQL34_RS10825 (NCTC12958_02292) - 2037717..2038856 (+) 1140 WP_002885655.1 site-specific integrase -
  DQL34_RS10840 (NCTC12958_02295) rarA 2039298..2040566 (-) 1269 WP_084826190.1 replication-associated recombination protein A Machinery gene
  DQL34_RS10845 (NCTC12958_02296) rpmB 2040736..2040924 (+) 189 WP_084826191.1 50S ribosomal protein L28 -
  DQL34_RS10850 (NCTC12958_02297) - 2041051..2041317 (+) 267 WP_111679750.1 IreB family regulatory phosphoprotein -
  DQL34_RS10855 (NCTC12958_02298) ruvX 2041317..2041736 (+) 420 WP_111679751.1 Holliday junction resolvase RuvX -
  DQL34_RS10860 (NCTC12958_02299) - 2041845..2042150 (+) 306 WP_011681733.1 DUF1292 domain-containing protein -
  DQL34_RS10865 (NCTC12958_02300) - 2042363..2044009 (+) 1647 WP_100284808.1 hypothetical protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46447.97 Da        Isoelectric Point: 6.8977

>NTDB_id=1018622 DQL34_RS10840 WP_084826190.1 2039298..2040566(-) (rarA) [Streptococcus thermophilus strain NCTC12958]
MPDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLGDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDIVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAVLADLRKSGNLPIPRHLRDGHYAGSKALGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=1018622 DQL34_RS10840 WP_084826190.1 2039298..2040566(-) (rarA) [Streptococcus thermophilus strain NCTC12958]
ATGCCAGATAATCTTGCCTTACGCATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAACATTTAGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGATAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTCTAGATGAGATCCATCGTTTGGATAAAGCAAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCGTTTTTTTCTG
TAACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTGGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGGGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATCGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGGCAGC
ATCATATTACTTTAGACATAGTGGAAAATAGCTTACAACGCAGTTATATTACTATGGATAAAGACGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTGATGTTAATGCCAGTCTTCACTATGCGGCACGTTTGGTTGA
GGCAGGGGATTTGCCTAGTCTAGCACGTCGCTTGACTGTGATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGTCCTGGCGGATCTTAGAAAGTCTGG
GAATTTACCTATTCCGCGTCATCTGAGAGATGGACACTATGCTGGAAGTAAGGCACTGGGTAATGCACAAGATTATAAGT
ATCCACATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCAGATAAATTAAGAGGAGTCAATTATTTCCAACCT
AATGAAACTGGGAAATACGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.427

99.289

0.59