Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ABUL18_RS09745 Genome accession   NZ_CP160103
Coordinates   2236581..2238419 (-) Length   612 a.a.
NCBI ID   WP_366573497.1    Uniprot ID   -
Organism   Bifidobacterium longum subsp. suillum strain DK001B-1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2231581..2243419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUL18_RS09725 (ABUL18_09725) rsmI 2232174..2233184 (-) 1011 WP_015512102.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ABUL18_RS09735 (ABUL18_09735) - 2233882..2235300 (-) 1419 WP_011068650.1 MFS transporter -
  ABUL18_RS09740 (ABUL18_09740) - 2235382..2236428 (+) 1047 WP_165506325.1 FAD:protein FMN transferase -
  ABUL18_RS09745 (ABUL18_09745) rcrQ 2236581..2238419 (-) 1839 WP_366573497.1 ABC transporter ATP-binding protein Regulator
  ABUL18_RS09750 (ABUL18_09750) rcrP 2238635..2240506 (-) 1872 WP_100970039.1 ABC transporter ATP-binding protein Regulator
  ABUL18_RS09755 (ABUL18_09755) - 2240693..2241214 (-) 522 WP_041473941.1 MarR family transcriptional regulator -
  ABUL18_RS09760 (ABUL18_09760) - 2241674..2241916 (+) 243 WP_013410549.1 hypothetical protein -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 67149.62 Da        Isoelectric Point: 6.2415

>NTDB_id=1018086 ABUL18_RS09745 WP_366573497.1 2236581..2238419(-) (rcrQ) [Bifidobacterium longum subsp. suillum strain DK001B-1]
MPRGPMGGRRAVEEPHDFGKVMGKLVNYCRNYLPVIIIALILGAAGTVCQIVGPDKLKDMTNEIVKGLPAIVNGRPVMNS
VDFGTVGHIAWTLVALYVGYAVLGYVQSWMMANVTQRTAQRLRESISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSVTLFVGALVMMFYNNVIMTLCAIGASLIGLIIMMAIMKSSQKYFARQQMALGDVNGHVEEMYAGHLIVK
AYNGEADSIRRFEKYNSDLYESGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALALDGQIEFGVIVAFMMYIRLFTQPL
SQFAQAFQNLQRCAAAAERVFGFLEEPEMEDESGKQALLGKNYMGGHEVKGDVEFSHVQFGYEPGKPIIHDFSVSVKAGQ
KVAIVGPTGAGKTTMVNLLMRFYEISGGSISIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENVAYSKPGVTNKQIE
DACKAVGLDHFIRSLPDGYDTVLDDKSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTS
FVIAHRLSTIRDADMILVMNHGDVIERGTHDELLAAGGFYADLYNSQFALAD

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=1018086 ABUL18_RS09745 WP_366573497.1 2236581..2238419(-) (rcrQ) [Bifidobacterium longum subsp. suillum strain DK001B-1]
ATGCCAAGAGGACCAATGGGCGGCAGGCGTGCCGTCGAAGAGCCCCATGATTTCGGCAAAGTCATGGGCAAGCTCGTGAA
CTATTGCCGCAACTATCTTCCCGTCATCATCATCGCGCTCATCCTGGGCGCGGCCGGCACCGTCTGCCAGATCGTCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCGTCAAAGGTCTGCCCGCCATCGTTAACGGCAGACCGGTGATGAACTCG
GTAGATTTCGGCACGGTGGGCCACATCGCCTGGACTTTGGTGGCCCTGTACGTGGGCTACGCCGTGCTCGGCTACGTGCA
AAGCTGGATGATGGCCAACGTCACCCAGCGCACCGCCCAGCGACTGCGCGAATCGATCTCGGTCAAAATCAACAAACTGC
CGCTCAAATACTTCGACAAGGTCAGCTACGGCGACGTGCTGTCCCGCATCACCAACGATGTGGACGCCATCGGCCAGACG
CTGGGGCAGTCGCTCGGCTCGCTGATTACCTCGGTGACGCTGTTCGTGGGCGCGCTGGTGATGATGTTCTACAACAACGT
GATCATGACCCTGTGCGCCATCGGTGCCAGCCTCATCGGCCTGATCATCATGATGGCCATCATGAAGTCCTCCCAGAAGT
ACTTCGCCCGGCAGCAGATGGCGCTAGGTGACGTCAACGGCCACGTGGAGGAGATGTACGCCGGCCACCTCATCGTCAAG
GCATACAACGGCGAGGCCGATTCGATCCGCCGCTTCGAGAAGTACAACTCGGACCTCTACGAGTCCGGCTGGAAGTCGCA
GTTCCTCTCCGGCCTGATGATGCCGCTCATGAATTTCGTGGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTGGGCGCGG
CGCTCGCGCTCGACGGGCAGATCGAGTTCGGCGTGATTGTGGCGTTCATGATGTACATCCGCCTGTTCACTCAGCCGCTT
TCGCAGTTTGCGCAGGCCTTCCAGAACCTGCAGCGCTGCGCGGCCGCCGCCGAGCGCGTGTTCGGCTTCCTTGAAGAGCC
GGAGATGGAAGACGAATCCGGCAAGCAGGCCCTACTCGGCAAGAACTACATGGGCGGCCACGAAGTGAAGGGCGACGTGG
AATTCAGCCACGTACAGTTCGGCTACGAACCGGGCAAGCCGATCATCCACGACTTCTCCGTCTCCGTCAAGGCCGGGCAG
AAGGTCGCCATCGTCGGCCCGACCGGTGCCGGCAAGACCACCATGGTCAACCTGCTGATGCGCTTCTATGAGATTTCCGG
CGGTTCGATTTCGATTGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAACGTGCACGACCAGTTCTCCATGGTGTTGC
AGGATACGTGGGTGTTCCGCGGCACTGTGCGCGAGAACGTCGCTTACTCCAAGCCTGGCGTGACCAACAAGCAAATCGAG
GATGCGTGCAAGGCCGTGGGCCTCGACCACTTCATCCGCTCACTGCCGGACGGCTATGACACCGTGCTCGATGACAAGTC
GTCGCTCTCCCAGGGCCAGAAGCAGCTGCTGACCATCGCCCGCGCGATGGTGCAGGACGCGCCGATTCTGATTCTCGACG
AGGCCACCTCCTCGGTCGATACCCGTACTGAAGAGCTGATTCAGAAGGCCATGGATGCGCTGACCGTGGGGCGTACGAGC
TTTGTGATCGCGCATCGCCTCTCCACGATTCGCGACGCCGACATGATCCTCGTCATGAACCACGGCGACGTGATCGAGCG
CGGCACGCATGATGAACTGCTGGCGGCGGGCGGTTTTTACGCCGACCTCTACAACAGCCAGTTCGCGCTTGCTGACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-320)

ABC transporter (ABC_tran)

(390-537)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

53.912

96.078

0.518

Multiple sequence alignment