Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   DQL30_RS08270 Genome accession   NZ_LS483333
Coordinates   1615581..1616849 (+) Length   422 a.a.
NCBI ID   WP_011285735.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12048     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1610581..1621849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL30_RS08245 (NCTC12048_01638) - 1610749..1611498 (-) 750 WP_032459938.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  DQL30_RS08250 (NCTC12048_01639) prmA 1611498..1612451 (-) 954 WP_111713965.1 50S ribosomal protein L11 methyltransferase -
  DQL30_RS08255 (NCTC12048_01640) - 1612522..1612992 (-) 471 WP_011285734.1 DUF3013 family protein -
  DQL30_RS08260 (NCTC12048_01641) pabB 1613192..1614949 (+) 1758 WP_111714037.1 aminodeoxychorismate synthase component I -
  DQL30_RS08265 (NCTC12048_01642) - 1614982..1615548 (+) 567 WP_111713966.1 aminodeoxychorismate/anthranilate synthase component II -
  DQL30_RS08270 (NCTC12048_01643) rarA 1615581..1616849 (+) 1269 WP_011285735.1 replication-associated recombination protein A Machinery gene
  DQL30_RS08285 (NCTC12048_01646) - 1617349..1617789 (+) 441 WP_011889182.1 GNAT family N-acetyltransferase -
  DQL30_RS08290 (NCTC12048_01647) - 1617844..1618350 (+) 507 WP_011529046.1 DNA topology modulation protein -
  DQL30_RS08295 (NCTC12048_01648) smeZ 1618601..1619302 (+) 702 WP_111713967.1 streptococcal mitogenic exotoxin SmeZ -
  DQL30_RS09405 (NCTC12048_01649) - 1619719..1619853 (-) 135 WP_011018269.1 hypothetical protein -
  DQL30_RS08300 (NCTC12048_01650) - 1620032..1621660 (+) 1629 WP_010922707.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46615.04 Da        Isoelectric Point: 6.3774

>NTDB_id=1018014 DQL30_RS08270 WP_011285735.1 1615581..1616849(+) (rarA) [Streptococcus pyogenes strain NCTC12048]
MPDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKTAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPDAQVHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALADLRTSGNLPIPRHLRDGHYAGSKDLGNAKDYLYPHAYPEKWVKQQYLPDKLVGHHYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=1018014 DQL30_RS08270 WP_011285735.1 1615581..1616849(+) (rarA) [Streptococcus pyogenes strain NCTC12048]
ATGCCTGATCATTTAGCGCTCAGAATGCGCCCCAAAACCATTTCAGAGGTCATCGGACAAAAACACCTTGTTGGCGAAGG
CAAAATCATCCGTCGCATGGTAGAAGCAAACAGACTATCGTCCATGATCCTCTATGGCCCTCCAGGAATCGGTAAAACTT
CCATTGCTTCTGCTATTGCTGGTACTACTAGATATGCCTTTCGGACCTTTAATGCCACCATTGACAGCAAAAAACGTCTC
CAAGAAATTGCGGAAGAAGCTAAATTTTCTGGTGGCTTGGTACTATTACTAGACGAGATTCATCGCCTTGACAAAACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAATGGCACCATTATCATGATTGGAGCAACCACTGAGAACCCCTTCTTTTCAG
TAACACCCGCTATCAGAAGCAGGGTCCAGATTTTTGAATTGGAACCACTTTCTAACGAGGATATTAAAACAGCCATTCAG
CTAGCAATTTCCGACAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACCATGGATAAAAACGGGGACGGGCATTAT
GATGTCCTATCAGCCTTACAAAAATCCATTAGAGGTTCTGATGTCAATGCTAGCCTGCACTACGCCGCTCGTTTAGTAGA
AGCTGGAGACTTGCCTAGTTTAGCAAGACGATTGACCATTATTGCTTACGAAGATATTGGCTTAGCCAACCCTGACGCCC
AAGTTCATACCGTCACCGCACTAGATGCCGCTCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATCGCTAACGTGGTC
ATTGATTTGGCTCTATCACCTAAATCCAATTCAGCTTATTTAGCTATGGATGCAGCTTTAGCTGATTTGAGAACATCAGG
TAACCTCCCCATTCCAAGGCATCTTAGAGACGGGCATTATGCTGGCAGTAAGGACCTAGGCAATGCCAAAGATTACCTCT
ACCCACACGCCTACCCCGAAAAATGGGTCAAACAACAATACCTACCAGATAAATTAGTAGGACATCATTATTTTGAAGCC
AATGAAACCGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGTATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(174-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.952

98.815

0.592