Detailed information NTG1017555

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABX016_RS00145
• Genome accession: NZ_CP160071
• Coordinates: 25424..26905 (-)
• Length: 493 a.a.
• NCBI ID: WP_370581070.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Amel06
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 20424..31905

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABX016_RS00130 (ABX016_06640)	amgK	22541..23545 (+)	1005	WP_110414459.1	N-acetylmuramate/N-acetylglucosamine kinase AmgK	-
ABX016_RS00135 (ABX016_16005)	-	23616..24593 (-)	978	WP_370581068.1	hypothetical protein	-
ABX016_RS00140 (ABX016_16010)	-	24663..25424 (-)	762	WP_370581069.1	class I SAM-dependent methyltransferase	-
ABX016_RS00145 (ABX016_06620)	pilR	25424..26905 (-)	1482	WP_370581070.1	sigma-54-dependent transcriptional regulator	Regulator
ABX016_RS00150 (ABX016_06615)	-	26898..28472 (-)	1575	WP_025331230.1	nitrogen regulation protein NR(II)	-
ABX016_RS00155 (ABX016_06605)	parC	28479..30797 (-)	2319	WP_370581071.1	DNA topoisomerase IV subunit A	-

Sequence

Protein

• Length: 493 a.a.
• Molecular weight: 55400.18 Da
• Isoelectric Point: 5.1258

>NTDB_id=1017555 ABX016_RS00145 WP_370581070.1 25424..26905(-) (pilR) [Snodgrassella alvi strain Amel06]
MNNNQMDLEKPVLIIDDEADIRDLMELTLIKMGLSVKTAAGVGEAKKALRTHAFSLVLTDMRMPDGSGLEIVDYITAHNL
DIPIAVITAYGNAAQAVQALKNGAFDYLQKPITLAQLRTLVKSVITINNTAETEIDNKMVTAFKQSENKQKNEDTSAMVN
EQPVRERLLGNSPLITEVRQLISKLAKSNVPVYIAGESGSGKEQAARSIHEQSERRDKAFVAVNCGAIPEALMESEFFGY
KKGSFTGAESDRAGFFQHADGGTLFLDEVADLPLSMQVKLLRAIQERAVRRIGEMEEKQVDVRIICATHKDLNALVESGQ
FRQDLFYRLNVVSITMPPLRELRDDLPQLIRVLLQRILHDETMTLTPEAKKALLQYSYPGNFRELENILERAIALSKNHI
IEVDDLQIHSYQLDNPRTESAENAGSNLSADSNEEIEDYQFGKTQIQDYLDEIERKILEQALAQTRYNRTQAAKLLGISF
RSMRYRMERLGIV

Nucleotide

• Length: 1482 bp

>NTDB_id=1017555 ABX016_RS00145 WP_370581070.1 25424..26905(-) (pilR) [Snodgrassella alvi strain Amel06]
ATGAATAATAATCAGATGGACTTAGAAAAGCCGGTACTGATAATAGATGATGAAGCCGATATTCGTGATTTAATGGAGTT
AACCCTGATTAAAATGGGTTTGTCCGTAAAAACTGCCGCTGGCGTAGGTGAGGCAAAAAAGGCTTTACGTACGCATGCTT
TCTCCCTGGTGCTAACGGATATGCGTATGCCGGATGGCTCCGGGCTGGAGATTGTTGATTATATCACTGCTCATAATCTG
GATATTCCGATTGCAGTTATTACCGCTTACGGAAATGCAGCACAGGCTGTACAGGCACTGAAAAATGGTGCTTTTGATTA
CTTACAAAAACCCATTACTCTGGCGCAGCTGCGTACTCTGGTTAAATCTGTTATTACAATCAATAATACTGCCGAAACCG
AAATAGATAATAAAATGGTAACCGCATTTAAACAGTCTGAAAATAAACAAAAAAATGAAGATACTTCCGCAATGGTTAAC
GAACAGCCGGTACGTGAACGTTTACTGGGTAATTCTCCGTTAATAACTGAAGTACGTCAGTTGATCAGTAAGCTGGCTAA
GAGTAACGTGCCGGTATACATTGCCGGAGAATCAGGCAGTGGTAAAGAGCAGGCAGCACGCAGTATTCATGAACAGTCAG
AACGCAGAGACAAGGCATTTGTTGCTGTAAATTGTGGTGCCATACCTGAAGCATTGATGGAAAGTGAGTTTTTTGGTTAT
AAAAAAGGCAGTTTTACCGGAGCAGAATCAGATAGGGCCGGTTTTTTTCAGCATGCGGACGGCGGAACATTATTTCTGGA
TGAAGTAGCTGATTTACCACTATCGATGCAGGTTAAATTATTGCGCGCCATTCAGGAACGTGCTGTACGCCGGATTGGCG
AAATGGAAGAAAAGCAGGTTGATGTCCGTATTATCTGTGCAACCCATAAAGATTTAAATGCTCTGGTTGAATCAGGTCAG
TTTCGTCAGGACTTGTTTTATCGTTTGAATGTTGTATCTATTACCATGCCGCCATTACGTGAATTACGTGATGATTTGCC
GCAGTTAATTCGGGTTTTACTGCAACGAATTTTGCATGATGAAACCATGACATTAACACCGGAAGCAAAAAAAGCACTGT
TGCAATACAGTTATCCAGGTAATTTCCGTGAATTGGAGAATATTCTGGAACGTGCTATCGCACTGTCGAAAAATCATATT
ATTGAGGTAGATGATTTACAGATTCATAGCTATCAGCTGGATAATCCGCGTACTGAATCTGCAGAGAATGCCGGCAGTAA
TCTATCCGCAGATAGTAATGAGGAAATTGAGGATTACCAGTTCGGAAAAACTCAGATACAGGATTATCTGGATGAAATAG
AGAGAAAAATCCTGGAACAGGCTTTGGCGCAAACCCGATATAACCGAACACAGGCAGCCAAATTACTGGGTATCAGTTTT
CGTTCTATGCGTTACCGGATGGAACGGTTAGGGATTGTCTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (450-489)

• Sigma-54 interaction domain (Sigma54_activat) (169-334)

• Response regulator receiver domain (Response_reg) (12-121)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	51.653	98.174	0.507
pilR	Acinetobacter baumannii strain A118	42.3	98.783	0.418