Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NSQ88_RS07230 Genome accession   NZ_CP159977
Coordinates   1510073..1512469 (+) Length   798 a.a.
NCBI ID   WP_363551518.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL W8-0751     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1505073..1517469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ88_RS07210 (NSQ88_07210) - 1506228..1506878 (+) 651 WP_034771299.1 YitT family protein -
  NSQ88_RS07215 (NSQ88_07215) - 1507017..1507439 (+) 423 WP_363551516.1 Rrf2 family transcriptional regulator -
  NSQ88_RS07220 (NSQ88_07220) - 1507506..1508651 (+) 1146 WP_363551517.1 cysteine desulfurase family protein -
  NSQ88_RS07225 (NSQ88_07225) mnmA 1508663..1509787 (+) 1125 WP_269147496.1 tRNA 2-thiouridine(34) synthase MnmA -
  NSQ88_RS07230 (NSQ88_07230) recD2 1510073..1512469 (+) 2397 WP_363551518.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NSQ88_RS07235 (NSQ88_07235) - 1512572..1512766 (+) 195 WP_034771285.1 hypothetical protein -
  NSQ88_RS07240 (NSQ88_07240) - 1512812..1513879 (+) 1068 WP_251241442.1 AI-2E family transporter -
  NSQ88_RS07245 (NSQ88_07245) alaS 1514254..1516884 (+) 2631 WP_342015014.1 alanine--tRNA ligase -
  NSQ88_RS07250 (NSQ88_07250) - 1517108..1517377 (+) 270 WP_034771279.1 IreB family regulatory phosphoprotein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90608.66 Da        Isoelectric Point: 5.2415

>NTDB_id=1016923 NSQ88_RS07230 WP_363551518.1 1510073..1512469(+) (recD2) [Caldifermentibacillus hisashii strain FSL W8-0751]
MQQEERYIKGRPIVTIFHNEQNLYTVLRIRVDESNEAGVNKDAVVTGYFPRLYEEETYIFYGKFTDHPKYGPQFQVDHFR
KDLPKTKQGVVQYLSSELFKGIGKKTAENIVDVLGENAIERIMKQPSLLDTVPKLAADKAKLLHEKLIEYQGLENIMVGL
NQYGFGPQLSMRIYQTYKEHTLEIVENNPYKLVEDIEGIGFGRADELGFKLGMKGNHPDRVKAGCLYTLETDCIQEGHCY
LEKKTFIPTVKKLLESNQPVEIFPEEIEHELLKLEEEGKIVIDEERVFLPSIFYSEKGLVTNIKRILAQKEFEDGFPESE
FLLALGSLEERLGIQYAPSQREAIQTALSSPMLILTGGPGTGKTTVIKGIVELYGELHGCSLDPKDYKKDEVFPFVLAAP
TGRAAKRMAESTGLPAVTIHRLLGWNGTETFDYNEDNPIEGKIVIIDEMSMVDIWLAHHLFKALPAHVQVILVGDEDQLP
SVGPGQVLKDLLASERIPTVRLTDIYRQESGSSIIQLAHAIKNGTIPEDLRNQQKDRSFISCRTTQVADVVKQVVGHAIN
KGYTPKEIQVLAPMYRGPAGIDELNILLQEILNGTNKEKRRELNFGDHTYRVGDKVLQLINQPDKNIFNGDIGEIVAIFY
AKETEEKVDQLVVSFDGNEVTYPRQDLHQITLAYCCSIHKSQGSEFPIVILPIVRGYHRMLRRNLIYTAITRSKEKLILC
GEEDAFRTAVYRTDDNMRNTTLKKRLLQEINGTHTPDIGVVKEDMSYEERLMNTDPMVGMENISPYDFMIEDRAEYLS

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=1016923 NSQ88_RS07230 WP_363551518.1 1510073..1512469(+) (recD2) [Caldifermentibacillus hisashii strain FSL W8-0751]
ATGCAACAAGAAGAACGTTATATTAAAGGGCGACCGATCGTCACCATTTTTCACAATGAACAAAATTTATATACCGTTCT
TCGGATTCGTGTCGATGAATCAAATGAGGCTGGTGTGAACAAAGATGCGGTTGTCACCGGCTATTTCCCCCGTCTGTATG
AAGAGGAAACTTATATTTTTTACGGAAAGTTTACGGATCATCCAAAATACGGTCCACAATTTCAAGTGGACCATTTTCGA
AAAGATCTGCCAAAGACAAAACAAGGTGTTGTTCAATATTTATCAAGTGAACTTTTTAAAGGAATTGGAAAGAAAACGGC
TGAAAATATTGTGGACGTGCTGGGTGAAAATGCTATCGAACGCATCATGAAACAGCCGTCTTTATTGGACACGGTACCGA
AATTGGCTGCTGATAAAGCAAAATTGTTACATGAAAAATTAATAGAGTATCAAGGGTTAGAAAATATTATGGTCGGGTTG
AATCAATACGGGTTCGGTCCGCAGCTGTCTATGCGAATCTATCAAACATATAAAGAGCATACACTGGAAATCGTCGAAAA
TAACCCGTATAAACTTGTGGAAGATATTGAAGGAATTGGCTTTGGTCGGGCAGATGAATTAGGCTTTAAACTCGGCATGA
AAGGAAATCATCCGGATCGGGTTAAGGCCGGTTGTTTATACACATTAGAAACAGATTGTATTCAAGAAGGTCATTGTTAT
TTGGAAAAGAAAACTTTCATTCCGACTGTTAAAAAGTTGCTGGAATCTAACCAGCCGGTGGAAATTTTTCCGGAAGAAAT
TGAGCATGAACTTTTGAAACTGGAGGAAGAAGGAAAGATCGTCATCGATGAGGAACGTGTATTTCTACCTTCCATTTTTT
ATTCGGAAAAAGGTTTGGTAACGAATATAAAAAGAATCTTGGCTCAAAAAGAATTTGAAGACGGCTTTCCGGAATCAGAA
TTTCTACTTGCATTAGGTAGTTTAGAGGAACGGCTTGGTATTCAATATGCTCCATCACAAAGGGAAGCAATTCAAACCGC
ACTCTCCAGTCCAATGTTAATTTTAACCGGCGGACCGGGAACGGGAAAAACGACGGTAATTAAAGGAATCGTTGAACTGT
ATGGAGAATTGCACGGTTGCAGTTTGGATCCAAAAGACTATAAAAAGGATGAAGTGTTTCCGTTTGTGTTGGCTGCTCCA
ACCGGTCGGGCCGCAAAACGGATGGCGGAATCAACCGGTTTACCGGCAGTAACGATTCATCGATTACTCGGATGGAATGG
AACAGAAACCTTTGATTATAACGAAGATAATCCGATTGAAGGGAAGATTGTTATCATTGATGAGATGTCGATGGTTGACA
TTTGGCTTGCCCATCATTTATTTAAAGCTTTGCCTGCGCATGTGCAAGTAATTTTGGTCGGTGATGAAGATCAATTACCT
TCCGTTGGCCCGGGGCAAGTTTTGAAAGATTTATTAGCCTCAGAACGAATTCCGACCGTTCGTTTGACGGATATTTATCG
ACAAGAAAGCGGCTCATCCATTATTCAGCTTGCTCATGCCATAAAAAACGGGACGATACCGGAAGATTTAAGAAACCAAC
AAAAGGATCGTTCATTCATTTCTTGCCGTACGACACAAGTTGCTGATGTCGTAAAGCAGGTCGTCGGACATGCAATCAAT
AAAGGTTATACACCTAAAGAAATTCAAGTTTTGGCACCGATGTATCGGGGGCCGGCCGGAATTGATGAACTGAATATACT
TCTCCAAGAAATATTGAATGGAACGAACAAGGAAAAGCGAAGGGAATTAAACTTTGGCGACCATACTTACCGGGTTGGCG
ATAAAGTTTTGCAATTAATCAATCAACCGGATAAAAATATTTTTAACGGTGATATCGGTGAAATTGTAGCTATTTTTTAT
GCAAAAGAGACAGAGGAAAAAGTTGATCAACTGGTCGTTTCGTTTGACGGCAATGAGGTTACTTACCCGAGACAGGATTT
ACATCAAATTACCCTTGCCTATTGCTGCAGTATTCACAAATCGCAAGGGAGCGAATTTCCGATTGTCATTCTACCGATTG
TCAGAGGCTATCACCGGATGTTACGGAGAAATCTTATTTATACGGCCATCACGCGGAGTAAAGAAAAATTAATTTTATGC
GGGGAAGAGGATGCCTTTCGAACCGCCGTTTATCGTACGGATGATAATATGAGGAACACGACGTTAAAGAAACGATTATT
GCAAGAAATAAACGGAACTCACACTCCGGATATCGGGGTAGTGAAAGAAGATATGTCTTATGAAGAACGATTAATGAATA
CGGATCCGATGGTTGGCATGGAGAATATTAGCCCGTATGATTTCATGATTGAAGATAGAGCGGAATATTTAAGTTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-655)

Helix-hairpin-helix containing domain (HHH_RecD2)

(150-240)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-720)

AAA domain (AAA_30)

(336-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.538

99.373

0.612

Multiple sequence alignment