Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   NSQ88_RS07135 Genome accession   NZ_CP159977
Coordinates   1490656..1493016 (+) Length   786 a.a.
NCBI ID   WP_363551510.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL W8-0751     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1485656..1498016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ88_RS07120 (NSQ88_07120) spoVB 1486177..1487727 (-) 1551 WP_216407728.1 stage V sporulation protein B -
  NSQ88_RS07125 (NSQ88_07125) - 1487860..1488159 (+) 300 WP_052480435.1 post-transcriptional regulator -
  NSQ88_RS07130 (NSQ88_07130) secDF 1488286..1490547 (+) 2262 WP_095142199.1 protein translocase subunit SecDF -
  NSQ88_RS07135 (NSQ88_07135) recJ 1490656..1493016 (+) 2361 WP_363551510.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  NSQ88_RS07140 (NSQ88_07140) - 1493007..1493519 (+) 513 WP_041846212.1 adenine phosphoribosyltransferase -
  NSQ88_RS07145 (NSQ88_07145) - 1494004..1496196 (+) 2193 WP_363551511.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  NSQ88_RS07150 (NSQ88_07150) dtd 1496210..1496662 (+) 453 WP_363551512.1 D-aminoacyl-tRNA deacylase -
  NSQ88_RS07155 (NSQ88_07155) - 1496902..1497078 (+) 177 WP_034771312.1 hypothetical protein -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88969.38 Da        Isoelectric Point: 5.5412

>NTDB_id=1016922 NSQ88_RS07135 WP_363551510.1 1490656..1493016(+) (recJ) [Caldifermentibacillus hisashii strain FSL W8-0751]
MLQAKTRWAVREGNRQKAEQLMNELQLTPLVANLLVNRGLDTAESVKKFLNPDEEFHHPFLLNDMDICVERIFRAIRNGE
RMVVYGDYDADGVTSTYVLLKTLRELGADADFYIPNRFTEGYGPNEKAFRTLKEAGYHLIITVDNGIAGIHEAKVAKEIG
IDLIITDHHEPGPELPDCLAIIHPKRADSNYPFKDLAGVGVAFKLVTALLGKVPEELLPFAAIGTIADLVPLKDENRLIV
KKALPLLQSSDHFGLKALMWIAGINQQELNEESISFGLAPRINAPGRLYHAGMVVDLFLANDKDEAEQLAHEINEINKER
QEIVDKITVEAIEEISQSSNYIDDQVIVVGKEGWHAGVIGIVASRLVEKFYRPVIVFSFDQATGLAKGSARSIPKFNMYQ
NLFQCKELLPHFGGHPMAAGLTMKISDVPELRERLNRLASEQLDEEDFIPVTEVDGMIPLEDIHLQSVKELLQFAPFGTE
NPKPLLLINDIQLPQIKKVGAEKNHLKAIIENHSAQLDCIGFHMGDLADEISPLSKASVIGELAINEWNHVSKPQFILKD
ICIDEWQLFDYRGNRRIDQWIHQVPEKSSKLIVFRESTVNQMNLSEFAAGLEIIHSEASAKNCDIDGMNIVLIDLPQSKK
QLESLLAGKQVARIYAHFYQDDIELLNTMPTREHFKWMYAFLCKKGVFDFQRYGAELAKYKGWSLHTIKFMLTVFFELNF
VTMDNGILSVIKNPSKRDLSESKTYQLRQEIIQLEKELLFSSYKQLKNSLDRFIGTANMKEAKAWI

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=1016922 NSQ88_RS07135 WP_363551510.1 1490656..1493016(+) (recJ) [Caldifermentibacillus hisashii strain FSL W8-0751]
ATGTTGCAAGCAAAGACGCGTTGGGCGGTTCGAGAAGGAAATCGTCAAAAAGCGGAACAATTAATGAATGAACTGCAGTT
GACACCTCTAGTAGCAAATTTATTAGTCAATCGAGGTTTAGATACGGCTGAAAGTGTAAAGAAATTTTTAAATCCGGATG
AAGAGTTTCACCATCCTTTTTTGCTTAATGATATGGATATATGTGTTGAACGAATTTTTCGGGCAATTCGAAATGGTGAG
CGAATGGTCGTGTATGGCGACTATGATGCCGATGGAGTAACAAGTACTTATGTATTATTGAAAACATTACGTGAACTCGG
TGCGGATGCCGATTTTTATATACCAAATCGCTTCACGGAAGGATACGGCCCAAATGAAAAAGCATTTCGAACACTGAAAG
AAGCCGGTTATCATTTAATTATCACGGTTGATAACGGAATTGCCGGGATTCATGAAGCAAAAGTGGCAAAAGAAATTGGT
ATTGATTTAATCATCACCGATCATCACGAACCCGGACCGGAACTCCCGGATTGTTTGGCGATTATTCATCCGAAGAGGGC
TGATTCCAATTACCCGTTTAAAGATTTAGCCGGTGTCGGTGTCGCGTTTAAATTGGTGACGGCTCTTTTAGGGAAAGTTC
CGGAAGAATTGCTTCCGTTTGCAGCAATCGGAACTATAGCTGATTTAGTACCTCTCAAAGATGAAAATCGCTTGATTGTA
AAAAAAGCATTACCTCTCTTACAATCGTCGGATCATTTTGGTTTAAAGGCGTTAATGTGGATTGCCGGGATCAATCAGCA
AGAATTAAATGAGGAATCAATTAGTTTTGGACTAGCCCCGCGGATAAACGCTCCCGGAAGATTATACCATGCCGGTATGG
TCGTTGATTTATTTTTGGCAAATGATAAAGATGAGGCTGAACAATTGGCCCATGAAATTAATGAAATCAATAAAGAAAGA
CAAGAAATCGTCGATAAAATAACTGTTGAAGCGATTGAGGAAATTTCTCAATCATCAAATTACATAGACGATCAGGTCAT
TGTGGTCGGTAAGGAAGGCTGGCATGCAGGGGTCATTGGCATTGTTGCTTCCAGATTAGTGGAAAAATTTTATCGGCCGG
TTATTGTTTTTTCTTTTGATCAAGCAACCGGATTGGCTAAGGGTTCGGCAAGAAGTATTCCAAAATTTAATATGTATCAA
AATTTGTTCCAATGTAAAGAACTTTTGCCGCATTTTGGAGGACACCCGATGGCTGCCGGGCTGACTATGAAAATCTCAGA
TGTTCCGGAATTAAGGGAACGGTTGAACCGGTTGGCAAGTGAACAATTAGATGAAGAGGATTTTATCCCGGTTACTGAAG
TCGATGGGATGATTCCATTGGAGGATATCCATTTGCAATCTGTTAAAGAATTGCTTCAGTTTGCTCCGTTTGGAACAGAA
AATCCAAAACCATTGCTTTTAATAAATGATATTCAATTGCCACAAATCAAAAAAGTCGGTGCAGAGAAAAATCATCTGAA
AGCAATCATTGAAAACCATTCGGCTCAACTTGATTGTATCGGTTTTCATATGGGGGATCTTGCCGATGAAATATCACCAT
TATCGAAAGCTTCGGTCATTGGAGAGTTAGCGATTAATGAATGGAATCATGTCAGTAAACCGCAGTTCATATTAAAAGAT
ATTTGTATTGATGAATGGCAATTGTTTGATTATCGCGGTAACCGAAGAATCGACCAGTGGATTCATCAAGTACCGGAAAA
AAGCAGTAAACTGATTGTTTTTCGCGAATCCACCGTCAACCAAATGAATTTATCCGAATTCGCTGCCGGTCTTGAAATCA
TCCATTCTGAAGCCTCAGCGAAAAATTGTGATATCGACGGAATGAACATTGTTCTAATTGATTTACCCCAATCAAAAAAA
CAATTAGAGTCATTATTGGCAGGAAAGCAGGTTGCAAGAATTTATGCCCATTTTTATCAAGACGATATCGAACTCTTAAA
TACGATGCCGACAAGAGAACATTTTAAATGGATGTATGCATTCTTGTGTAAAAAAGGTGTGTTTGATTTCCAGCGTTATG
GAGCCGAATTGGCGAAATATAAAGGATGGTCACTTCATACCATAAAATTTATGCTAACGGTGTTTTTTGAACTGAATTTT
GTTACAATGGATAATGGTATTCTTTCAGTTATAAAAAATCCGTCAAAACGAGATTTATCAGAATCGAAAACTTACCAATT
AAGACAGGAAATTATTCAATTGGAAAAAGAGTTGCTCTTTTCATCCTATAAACAATTAAAAAATAGTCTCGATAGATTTA
TCGGTACTGCAAATATGAAGGAGGCAAAGGCATGGATTTAG

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-225)

DHHA1 domain (DHHA1)

(308-437)

RecJ OB domain (RecJ_OB)

(454-560)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(567-768)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

51.871

98.601

0.511

Multiple sequence alignment