Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   W903_RS01135 Genome accession   NZ_CP006910
Coordinates   191912..192211 (+) Length   99 a.a.
NCBI ID   WP_038406052.1    Uniprot ID   -
Organism   Streptococcus agalactiae CNCTC 10/84     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 186912..197211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  W903_RS01110 (W903_0226) - 188781..189146 (+) 366 WP_000285373.1 DUF1033 family protein -
  W903_RS01115 (W903_0227) comGA 189318..190289 (+) 972 WP_000250801.1 competence type IV pilus ATPase ComGA Machinery gene
  W903_RS01120 (W903_0228) comGB 190183..191226 (+) 1044 WP_228313184.1 competence type IV pilus assembly protein ComGB Machinery gene
  W903_RS01125 (W903_0229) comGC/cglC 191223..191552 (+) 330 WP_000793380.1 competence type IV pilus major pilin ComGC Machinery gene
  W903_RS01130 (W903_0230) comGD 191527..191940 (+) 414 WP_000244259.1 competence type IV pilus minor pilin ComGD Machinery gene
  W903_RS01135 (W903_0231) comGE 191912..192211 (+) 300 WP_038406052.1 competence type IV pilus minor pilin ComGE Machinery gene
  W903_RS01140 (W903_0232) comGF 192165..192626 (+) 462 WP_001874060.1 competence type IV pilus minor pilin ComGF Machinery gene
  W903_RS01145 (W903_0233) comGG 192604..192975 (+) 372 WP_000601105.1 competence type IV pilus minor pilin ComGG Machinery gene
  W903_RS01150 (W903_0234) comGH 193090..194064 (+) 975 WP_001008567.1 class I SAM-dependent methyltransferase Machinery gene
  W903_RS01155 (W903_0235) - 194096..195289 (+) 1194 WP_000047534.1 acetate kinase -
  W903_RS01160 (W903_0236) - 195417..195609 (+) 193 Protein_173 helix-turn-helix transcriptional regulator -
  W903_RS10230 (W903_0237) - 195588..195854 (+) 267 Protein_174 hypothetical protein -
  W903_RS01165 (W903_0238) - 195923..196588 (+) 666 WP_000008107.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11238.33 Da        Isoelectric Point: 10.6118

>NTDB_id=101689 W903_RS01135 WP_038406052.1 191912..192211(+) (comGE) [Streptococcus agalactiae CNCTC 10/84]
MVTIVRKKIRAYILLESLVGLAILVTITSLVISEINRQQSHIARRQHEQEVLILARMAVQTDQKILEANGVNIRIEESKN
KIVLFEGNKEILHVSKVKG

Nucleotide


Download         Length: 300 bp        

>NTDB_id=101689 W903_RS01135 WP_038406052.1 191912..192211(+) (comGE) [Streptococcus agalactiae CNCTC 10/84]
GTGGTAACTATCGTAAGAAAGAAAATTAGAGCCTATATTTTACTGGAAAGCCTAGTGGGATTAGCTATTTTAGTTACTAT
TACAAGTTTAGTAATAAGTGAAATCAATCGTCAACAATCTCATATTGCAAGAAGGCAACATGAGCAAGAAGTATTGATAT
TAGCTAGAATGGCTGTGCAAACTGATCAAAAAATATTAGAAGCAAATGGTGTTAATATTCGCATTGAAGAAAGTAAAAAT
AAAATTGTGCTCTTTGAAGGTAATAAGGAAATTTTGCACGTATCAAAAGTTAAGGGTTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

38.542

96.97

0.374
  comGE Streptococcus mutans UA159

38.542

96.97

0.374

Multiple sequence alignment