Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ABXV02_RS13270 Genome accession   NZ_CP159912
Coordinates   2544075..2544854 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain PY79     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2539075..2549854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXV02_RS13240 fliH 2539093..2539845 (-) 753 WP_003244804.1 flagellar assembly protein FliH -
  ABXV02_RS13245 fliG 2539838..2540854 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  ABXV02_RS13250 fliF 2540867..2542477 (-) 1611 WP_010886506.1 flagellar basal-body MS-ring/collar protein FliF -
  ABXV02_RS13255 fliE 2542523..2542843 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  ABXV02_RS13260 flgC 2542854..2543306 (-) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  ABXV02_RS13265 flgB 2543306..2543695 (-) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  ABXV02_RS13270 codY 2544075..2544854 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ABXV02_RS13275 hslU 2544894..2546306 (-) 1413 WP_256683486.1 HslU--HslV peptidase ATPase subunit -
  ABXV02_RS13280 clpQ 2546314..2546859 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  ABXV02_RS13285 xerC 2546872..2547786 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  ABXV02_RS13290 trmFO 2547854..2549161 (-) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=1016754 ABXV02_RS13270 WP_003220850.1 2544075..2544854(-) (codY) [Bacillus subtilis strain PY79]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1016754 ABXV02_RS13270 WP_003220850.1 2544075..2544854(-) (codY) [Bacillus subtilis strain PY79]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment