Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DQL90_RS06460 Genome accession   NZ_LS483314
Coordinates   1260723..1261496 (+) Length   257 a.a.
NCBI ID   WP_111688630.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC3761     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1255723..1266496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL90_RS06440 (NCTC3761_01223) trmFO 1256067..1257374 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  DQL90_RS06445 (NCTC3761_01224) xerC 1257791..1258687 (+) 897 WP_001015597.1 tyrosine recombinase XerC -
  DQL90_RS06450 (NCTC3761_01225) hslV 1258684..1259229 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  DQL90_RS06455 (NCTC3761_01226) hslU 1259295..1260698 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  DQL90_RS06460 (NCTC3761_01227) codY 1260723..1261496 (+) 774 WP_111688630.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DQL90_RS06465 - 1261547..1261639 (+) 93 WP_001790530.1 hypothetical protein -
  DQL90_RS06470 (NCTC3761_01228) rpsB 1261838..1262605 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  DQL90_RS06475 - 1262639..1262752 (+) 114 WP_001789890.1 hypothetical protein -
  DQL90_RS06480 (NCTC3761_01229) tsf 1262787..1263668 (+) 882 WP_000201387.1 translation elongation factor Ts -
  DQL90_RS06485 (NCTC3761_01230) pyrH 1263805..1264527 (+) 723 WP_000057330.1 UMP kinase -
  DQL90_RS06490 (NCTC3761_01231) frr 1264546..1265100 (+) 555 WP_001280006.1 ribosome recycling factor -
  DQL90_RS06495 (NCTC3761_01232) - 1265473..1266243 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28767.18 Da        Isoelectric Point: 6.0680

>NTDB_id=1016359 DQL90_RS06460 WP_111688630.1 1260723..1261496(+) (codY) [Staphylococcus aureus strain NCTC3761]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYIERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=1016359 DQL90_RS06460 WP_111688630.1 1260723..1261496(+) (codY) [Staphylococcus aureus strain NCTC3761]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATATAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428