Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ABNX04_RS12455 Genome accession   NZ_CP159868
Coordinates   2611638..2612252 (-) Length   204 a.a.
NCBI ID   WP_038459268.1    Uniprot ID   -
Organism   Bacillus velezensis strain JLU-1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2606638..2617252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNX04_RS12425 (ABNX04_12425) rpsT 2606941..2607207 (+) 267 WP_003152876.1 30S ribosomal protein S20 -
  ABNX04_RS12430 (ABNX04_12430) holA 2607224..2608265 (-) 1042 Protein_2401 DNA polymerase III subunit delta -
  ABNX04_RS12435 (ABNX04_12435) - 2608305..2608456 (-) 152 Protein_2402 hypothetical protein -
  ABNX04_RS12440 (ABNX04_12440) - 2608497..2608631 (+) 135 WP_003152870.1 YqzM family protein -
  ABNX04_RS12445 (ABNX04_12445) comEC 2608650..2611001 (-) 2352 WP_038459264.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABNX04_RS12450 (ABNX04_12450) - 2611002..2611571 (-) 570 WP_038459266.1 ComE operon protein 2 -
  ABNX04_RS12455 (ABNX04_12455) comEA 2611638..2612252 (-) 615 WP_038459268.1 helix-hairpin-helix domain-containing protein Machinery gene
  ABNX04_RS12460 (ABNX04_12460) comER 2612311..2613132 (+) 822 WP_012118027.1 late competence protein ComER -
  ABNX04_RS12465 (ABNX04_12465) - 2613201..2613938 (-) 738 WP_038459270.1 class I SAM-dependent methyltransferase -
  ABNX04_RS12470 (ABNX04_12470) rsfS 2613935..2614291 (-) 357 WP_007408260.1 ribosome silencing factor -
  ABNX04_RS12475 (ABNX04_12475) yqeK 2614295..2614870 (-) 576 WP_032873949.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ABNX04_RS12480 (ABNX04_12480) - 2614860..2615429 (-) 570 WP_007408258.1 nicotinate-nucleotide adenylyltransferase -
  ABNX04_RS12485 (ABNX04_12485) yhbY 2615440..2615730 (-) 291 WP_007408257.1 ribosome assembly RNA-binding protein YhbY -
  ABNX04_RS12490 (ABNX04_12490) aroE 2615724..2616566 (-) 843 WP_003152856.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22206.44 Da        Isoelectric Point: 6.4939

>NTDB_id=1016293 ABNX04_RS12455 WP_038459268.1 2611638..2612252(-) (comEA) [Bacillus velezensis strain JLU-1]
MTKAMMTEPLRRNLKILGACLVAGAVFICIWLFRSEKEEPVKQQSVLGQTASASVADKKDTADDKIMIDVKGAVRNPGVY
EMKAGDRVTQAIEKAGGLKKKADELKVNLAEQLQDGTIVYIPSEGEEENRPKTAAGEKENAAVNINTASLDELQAISGVG
QKKAEAIIAYREEKGRFQTAEDLMNVSGFGEKSFERIKTSITVK

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1016293 ABNX04_RS12455 WP_038459268.1 2611638..2612252(-) (comEA) [Bacillus velezensis strain JLU-1]
ATGACGAAAGCGATGATGACGGAGCCGCTGCGGCGGAACCTGAAAATTCTGGGCGCTTGTCTTGTAGCAGGGGCGGTTTT
TATCTGCATTTGGCTGTTTCGTTCTGAAAAGGAAGAGCCGGTCAAACAGCAGTCCGTGCTCGGCCAAACAGCCTCAGCAT
CCGTCGCGGACAAAAAAGACACCGCAGACGACAAGATTATGATTGATGTGAAAGGCGCGGTCCGAAATCCCGGCGTGTAT
GAAATGAAAGCGGGAGACAGAGTGACTCAAGCCATTGAAAAAGCCGGCGGCCTGAAGAAAAAGGCGGATGAATTGAAAGT
TAATTTAGCAGAGCAGCTGCAGGACGGGACGATTGTTTATATTCCGAGTGAAGGCGAAGAGGAGAATCGCCCGAAAACAG
CAGCGGGTGAAAAGGAGAATGCAGCTGTCAATATCAATACGGCATCTCTGGACGAACTTCAGGCGATTTCCGGGGTGGGG
CAGAAAAAAGCGGAAGCGATTATCGCCTACCGAGAAGAAAAAGGACGGTTTCAGACTGCTGAAGATTTGATGAATGTATC
AGGCTTTGGAGAAAAGTCATTTGAGCGGATAAAAACTTCCATTACGGTAAAGTGA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(68-122)

Helix-hairpin-helix motif (HHH_3)

(141-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

58.115

93.627

0.544
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

35.071

100

0.363

Multiple sequence alignment