Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   DQL83_RS08965 Genome accession   NZ_LS483311
Coordinates   1736005..1737279 (+) Length   424 a.a.
NCBI ID   WP_000102731.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC6136     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1731005..1742279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL83_RS08935 (NCTC6136_01680) mnmA 1731207..1732325 (-) 1119 WP_000066097.1 tRNA 2-thiouridine(34) synthase MnmA -
  DQL83_RS08940 (NCTC6136_01681) - 1732326..1733468 (-) 1143 WP_000409167.1 cysteine desulfurase family protein -
  DQL83_RS08945 (NCTC6136_01682) - 1733780..1734793 (+) 1014 WP_000985895.1 LLM class flavin-dependent oxidoreductase -
  DQL83_RS08950 (NCTC6136_01683) - 1735030..1735176 (-) 147 WP_000009238.1 SAS049 family protein -
  DQL83_RS08955 (NCTC6136_01684) - 1735216..1735398 (-) 183 WP_000752909.1 CsbD family protein -
  DQL83_RS08960 (NCTC6136_01685) cymR 1735498..1735920 (-) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -
  DQL83_RS08965 (NCTC6136_01686) rarA 1736005..1737279 (+) 1275 WP_000102731.1 replication-associated recombination protein A Machinery gene
  DQL83_RS08970 (NCTC6136_01687) - 1737440..1738213 (-) 774 WP_000682643.1 tRNA threonylcarbamoyladenosine dehydratase -
  DQL83_RS08975 - 1738213..1738341 (-) 129 WP_001808039.1 hypothetical protein -
  DQL83_RS08985 (NCTC6136_01689) aspS 1738674..1740440 (-) 1767 WP_000044799.1 aspartate--tRNA ligase -
  DQL83_RS08990 (NCTC6136_01690) hisS 1740456..1741718 (-) 1263 WP_000590824.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47236.83 Da        Isoelectric Point: 8.3526

>NTDB_id=1016293 DQL83_RS08965 WP_000102731.1 1736005..1737279(+) (rarA) [Staphylococcus aureus strain NCTC6136]
MSTEPLASRMRPKNIDEIISQQHLVGPKGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=1016293 DQL83_RS08965 WP_000102731.1 1736005..1737279(+) (rarA) [Staphylococcus aureus strain NCTC6136]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAAAGGCATTATCAGAAGAATGGTTGACACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTGTTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATTGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAGTTATATCCTTTAAATGATGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGAAGAGAATGGTTTGAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGATG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCAGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATCCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTTAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(175-253)

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.286

99.057

0.686

Multiple sequence alignment