Detailed information NTG1016275

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ABNX04_RS07975
• Genome accession: NZ_CP159868
• Coordinates: 1638937..1639716 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain JLU-1
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1633937..1644716

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABNX04_RS07955 (ABNX04_07955)	trmFO	1634624..1635931 (+)	1308	WP_094031705.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ABNX04_RS07960 (ABNX04_07960)	xerC	1636001..1636918 (+)	918	WP_032871470.1	tyrosine recombinase XerC	-
ABNX04_RS07965 (ABNX04_07965)	hslV	1636934..1637479 (+)	546	WP_014417767.1	ATP-dependent protease subunit HslV	-
ABNX04_RS07970 (ABNX04_07970)	hslU	1637487..1638899 (+)	1413	WP_256052823.1	HslU--HslV peptidase ATPase subunit	-
ABNX04_RS07975 (ABNX04_07975)	codY	1638937..1639716 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ABNX04_RS07980 (ABNX04_07980)	flgB	1640070..1640459 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
ABNX04_RS07985 (ABNX04_07985)	flgC	1640459..1640911 (+)	453	WP_015239851.1	flagellar basal body rod protein FlgC	-
ABNX04_RS07990 (ABNX04_07990)	fliE	1640922..1641242 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
ABNX04_RS07995 (ABNX04_07995)	fliF	1641285..1642895 (+)	1611	WP_038458010.1	flagellar basal-body MS-ring/collar protein FliF	-
ABNX04_RS08000 (ABNX04_08000)	fliG	1642908..1643924 (+)	1017	WP_354664762.1	flagellar motor switch protein FliG	-
ABNX04_RS08005 (ABNX04_08005)	fliH	1643917..1644672 (+)	756	WP_038458013.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1016275 ABNX04_RS07975 WP_003154263.1 1638937..1639716(+) (codY) [Bacillus velezensis strain JLU-1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1016275 ABNX04_RS07975 WP_003154263.1 1638937..1639716(+) (codY) [Bacillus velezensis strain JLU-1]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACACTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471