Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ABWT76_RS25260 Genome accession   NZ_CP159837
Coordinates   5924291..5925397 (+) Length   368 a.a.
NCBI ID   WP_054464895.1    Uniprot ID   -
Organism   Planktothricoides raciborskii GIHE-MW2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5919291..5930397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWT76_RS25250 (ABWT76_005014) - 5920102..5922402 (+) 2301 WP_190877075.1 spermidine synthase -
  ABWT76_RS25255 (ABWT76_005015) - 5922811..5924127 (+) 1317 WP_054464776.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  ABWT76_RS25260 (ABWT76_005016) pilM 5924291..5925397 (+) 1107 WP_054464895.1 type IV pilus assembly protein PilM Machinery gene
  ABWT76_RS25265 (ABWT76_005017) - 5925403..5926206 (+) 804 WP_354635126.1 PilN domain-containing protein -
  ABWT76_RS25270 (ABWT76_005018) - 5926190..5927041 (+) 852 WP_354635127.1 hypothetical protein -
  ABWT76_RS25275 (ABWT76_005019) - 5927324..5929723 (+) 2400 WP_354635128.1 AMIN domain-containing protein -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 40178.13 Da        Isoelectric Point: 4.0801

>NTDB_id=1016118 ABWT76_RS25260 WP_054464895.1 5924291..5925397(+) (pilM) [Planktothricoides raciborskii GIHE-MW2]
MQNLLKKFLPGKAPGLGIEIAPDRINIVQLSQKKPGYKLETFVSVEVGEGLIEEGLIADPPEVAMLIQTALADNNIKARH
IATAIPAKEGVIRVVPVPAELNDLELREMVNQEAGLYLPFPREEADVDYQKMGVFEDEDGISKFQVLLVATRKEVTDTYI
STFEQAGLKIDVLDLTIFSLLRTIQGELSQLPQEEPVAIADIEFDSTEIAILMDGIPQFSRTIPIGTYQVQMALSQAMNL
PPSRQTDMLQEISIPANPTEITGEGTMGESNPGVQAIVKVLSELTDELRRSIDFFINQSEGPDVSQLFLAGPGAAIGQIE
EFFSHRLGLPVMIVDPVGDLAIEDEEQKLSQAIHPALGVVLGLGMREV

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=1016118 ABWT76_RS25260 WP_054464895.1 5924291..5925397(+) (pilM) [Planktothricoides raciborskii GIHE-MW2]
CTGCAAAATCTATTGAAAAAGTTCTTGCCAGGAAAAGCCCCTGGATTGGGCATCGAAATAGCCCCAGACCGGATTAATAT
TGTGCAATTGAGTCAGAAAAAGCCTGGATATAAACTAGAAACTTTTGTATCGGTGGAAGTAGGAGAAGGGTTGATCGAAG
AAGGACTGATTGCCGATCCACCGGAAGTCGCCATGCTGATTCAGACAGCTTTAGCGGATAATAATATCAAAGCCAGACAC
ATTGCCACGGCTATCCCTGCCAAAGAAGGTGTGATCCGGGTGGTGCCAGTGCCCGCCGAACTCAATGATTTAGAATTGCG
GGAAATGGTGAATCAAGAAGCGGGGCTATACTTACCCTTTCCCAGGGAAGAGGCTGATGTAGATTATCAAAAGATGGGGG
TGTTTGAGGATGAAGACGGAATTTCTAAATTCCAAGTCCTCCTAGTGGCAACTCGTAAAGAAGTCACCGATACTTATATT
AGTACCTTTGAACAAGCAGGGTTAAAGATTGATGTTTTAGATTTAACTATTTTTTCCCTGCTGCGGACGATTCAAGGTGA
ATTAAGCCAACTGCCCCAAGAAGAACCAGTGGCGATCGCGGACATTGAATTTGACAGCACCGAAATAGCCATTCTCATGG
ATGGCATTCCCCAATTTTCCCGCACTATTCCCATTGGCACTTACCAAGTTCAGATGGCACTGTCCCAAGCCATGAACTTG
CCTCCCTCCAGACAGACCGATATGCTACAAGAGATATCGATTCCCGCTAATCCAACGGAAATTACTGGGGAGGGTACAAT
GGGAGAAAGCAATCCTGGAGTCCAGGCAATTGTTAAAGTATTGTCTGAGCTTACCGATGAATTGCGGCGATCCATTGACT
TTTTTATCAATCAAAGTGAAGGCCCTGATGTCTCCCAGCTATTTCTCGCCGGACCAGGGGCAGCGATCGGCCAAATCGAG
GAATTTTTTAGTCATCGATTAGGTTTACCCGTTATGATCGTCGATCCAGTTGGTGACTTGGCGATCGAAGATGAAGAACA
AAAACTATCCCAAGCCATCCACCCAGCATTGGGGGTCGTCTTGGGTCTAGGAATGCGAGAGGTCTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(282-367)

Type IV pilus assembly protein PilM; (PilM_2)

(17-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

54.469

97.283

0.53

Multiple sequence alignment