Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   DQL62_RS08225 Genome accession   NZ_LS483300
Coordinates   1616690..1617964 (+) Length   424 a.a.
NCBI ID   WP_045157611.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC7485     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1611690..1622964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL62_RS08195 (NCTC7485_01551) mnmA 1611932..1613050 (-) 1119 WP_000066095.1 tRNA 2-thiouridine(34) synthase MnmA -
  DQL62_RS08200 (NCTC7485_01552) - 1613051..1614193 (-) 1143 WP_000409166.1 cysteine desulfurase family protein -
  DQL62_RS08205 (NCTC7485_01553) - 1614505..1615518 (+) 1014 WP_000985871.1 LLM class flavin-dependent oxidoreductase -
  DQL62_RS08210 (NCTC7485_01554) - 1615745..1615897 (-) 153 WP_000009239.1 SAS049 family protein -
  DQL62_RS08215 (NCTC7485_01555) - 1615937..1616083 (-) 147 WP_042852741.1 hypothetical protein -
  DQL62_RS08220 (NCTC7485_01556) cymR 1616183..1616605 (-) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -
  DQL62_RS08225 (NCTC7485_01557) rarA 1616690..1617964 (+) 1275 WP_045157611.1 replication-associated recombination protein A Machinery gene
  DQL62_RS08230 (NCTC7485_01558) - 1618125..1618898 (-) 774 WP_000682646.1 tRNA threonylcarbamoyladenosine dehydratase -
  DQL62_RS08235 - 1618898..1619026 (-) 129 WP_014937034.1 hypothetical protein -
  DQL62_RS08245 (NCTC7485_01560) aspS 1619359..1621125 (-) 1767 WP_000044799.1 aspartate--tRNA ligase -
  DQL62_RS08250 (NCTC7485_01561) hisS 1621141..1622403 (-) 1263 WP_000590826.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47298.90 Da        Isoelectric Point: 8.6794

>NTDB_id=1015680 DQL62_RS08225 WP_045157611.1 1616690..1617964(+) (rarA) [Staphylococcus aureus strain NCTC7485]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQFVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAKIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMAYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLSLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=1015680 DQL62_RS08225 WP_045157611.1 1616690..1617964(+) (rarA) [Staphylococcus aureus strain NCTC7485]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAATTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGAAAATTTTTGAGTTATATCCTTTAAATGATGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAGGATGAAGAGAATGGTTTAAAAACATATCAACCCAAAATTGATGAAGATGCCATGGCCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAAGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAAGTTTACCAGAAGCTAGAATACCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTAAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)

AAA C-terminal domain (AAA_assoc_2)

(175-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

68.81

99.057

0.682