Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   JMX72_RS29485 Genome accession   NZ_LR898867
Coordinates   6312578..6313102 (-) Length   174 a.a.
NCBI ID   WP_003116136.1    Uniprot ID   A0A0H2ZIN8
Organism   Pseudomonas aeruginosa strain MINF_3A isolate MINF_3A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6307578..6318102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMX72_RS29470 aroB 6308706..6309812 (-) 1107 WP_033989914.1 3-dehydroquinate synthase -
  JMX72_RS29475 aroK 6309862..6310380 (-) 519 WP_003095833.1 shikimate kinase AroK -
  JMX72_RS29480 pilQ 6310392..6312524 (-) 2133 WP_033989912.1 type 4a pilus secretin PilQ Machinery gene
  JMX72_RS29485 comL/pilP 6312578..6313102 (-) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  JMX72_RS29490 pilO 6313099..6313722 (-) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  JMX72_RS29495 pilN 6313719..6314315 (-) 597 WP_003141783.1 type 4a pilus biogenesis protein PilN -
  JMX72_RS29500 pilM 6314315..6315379 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  JMX72_RS29505 - 6315564..6318035 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19224.07 Da        Isoelectric Point: 9.7252

>NTDB_id=1015178 JMX72_RS29485 WP_003116136.1 6312578..6313102(-) (comL/pilP) [Pseudomonas aeruginosa strain MINF_3A isolate MINF_3A]
MRARLILSSLLLTMLAGCGANSEFGDLQAYMNEVRARPKGNIEPLPKFQPYEAFTYSASNLRSPFQPPVKIDLTVRQKGN
KVVKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1015178 JMX72_RS29485 WP_003116136.1 6312578..6313102(-) (comL/pilP) [Pseudomonas aeruginosa strain MINF_3A isolate MINF_3A]
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTCGGCGATCT
TCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTTCAGCCATATGAAGCTT
TTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAAGGCAAC
AAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.628

98.851

0.362