Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPOKI898_RS05125 Genome accession   NZ_CP006827
Coordinates   1093046..1093312 (-) Length   88 a.a.
NCBI ID   WP_017284177.1    Uniprot ID   -
Organism   Helicobacter pylori oki898     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1088046..1098312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI898_RS08675 - 1088118..1088483 (-) 366 WP_240444701.1 hypothetical protein -
  HPOKI898_RS05115 (HPOKI898_05335) - 1088600..1090633 (-) 2034 WP_025277018.1 type IA DNA topoisomerase -
  HPOKI898_RS05120 (HPOKI898_05340) comB4 1090636..1092999 (-) 2364 WP_038418861.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPOKI898_RS05125 (HPOKI898_05345) comB3 1093046..1093312 (-) 267 WP_017284177.1 hypothetical protein Machinery gene
  HPOKI898_RS05130 (HPOKI898_05350) - 1093313..1093615 (-) 303 WP_025276170.1 hypothetical protein -
  HPOKI898_RS05135 (HPOKI898_05355) - 1093612..1095135 (-) 1524 WP_025276171.1 hypothetical protein -
  HPOKI898_RS05140 (HPOKI898_05360) - 1095142..1095435 (-) 294 WP_025276172.1 hypothetical protein -
  HPOKI898_RS05145 (HPOKI898_05365) - 1095455..1096234 (-) 780 WP_025276173.1 hypothetical protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10144.95 Da        Isoelectric Point: 4.8782

>NTDB_id=101451 HPOKI898_RS05125 WP_017284177.1 1093046..1093312(-) (comB3) [Helicobacter pylori oki898]
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAIGLMASCVFVFYILEFFDEDITAILHALFTLR
TGARNYYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=101451 HPOKI898_RS05125 WP_017284177.1 1093046..1093312(-) (comB3) [Helicobacter pylori oki898]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGTTGGATTGTTAGTTTCTTAATGTCGGCATGGTTACTGTCATTCCAACCACTTTATGCTATAGGTTTAATGGCTA
GTTGTGTGTTTGTATTCTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCGCTTTTCACCTTAAGA
ACAGGAGCTAGAAATTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

42.169

94.318

0.398

Multiple sequence alignment