Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HPOKI898_RS02300 Genome accession   NZ_CP006827
Coordinates   473805..474980 (-) Length   391 a.a.
NCBI ID   WP_025276751.1    Uniprot ID   -
Organism   Helicobacter pylori oki898     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 468805..479980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI898_RS02265 (HPOKI898_02380) - 469132..469446 (+) 315 WP_000868000.1 hypothetical protein -
  HPOKI898_RS02270 (HPOKI898_02385) - 469424..470191 (+) 768 WP_025276748.1 RNA polymerase sigma factor FliA -
  HPOKI898_RS02275 (HPOKI898_02390) fliM 470184..471248 (+) 1065 WP_000763575.1 flagellar motor switch protein FliM -
  HPOKI898_RS02280 (HPOKI898_02395) fliY 471252..472115 (+) 864 WP_025276749.1 flagellar motor switch protein FliY -
  HPOKI898_RS02285 (HPOKI898_02400) - 472144..472680 (+) 537 WP_025275748.1 YhcH/YjgK/YiaL family protein -
  HPOKI898_RS02290 (HPOKI898_02405) - 472677..473174 (+) 498 WP_025276750.1 DUF2147 domain-containing protein -
  HPOKI898_RS02295 (HPOKI898_02410) fur 473193..473645 (-) 453 WP_000824992.1 ferric iron uptake transcriptional regulator -
  HPOKI898_RS02300 (HPOKI898_02415) rarA 473805..474980 (-) 1176 WP_025276751.1 replication-associated recombination protein A Machinery gene
  HPOKI898_RS02305 (HPOKI898_02420) - 474977..475348 (-) 372 WP_025276752.1 heat shock protein transcriptional repressor HspR -
  HPOKI898_RS02310 (HPOKI898_02425) - 475358..476224 (-) 867 WP_025276753.1 DnaJ family protein -
  HPOKI898_RS02315 (HPOKI898_02430) - 476392..477642 (+) 1251 WP_025276754.1 hypothetical protein -
  HPOKI898_RS02320 (HPOKI898_02435) - 477737..478573 (-) 837 WP_080276189.1 5'-3' exonuclease -
  HPOKI898_RS02325 (HPOKI898_02445) - 478829..479725 (-) 897 WP_025276755.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43697.36 Da        Isoelectric Point: 8.5302

>NTDB_id=101440 HPOKI898_RS02300 WP_025276751.1 473805..474980(-) (rarA) [Helicobacter pylori oki898]
MSLTSLLNPTSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLGRPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCVK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIENPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLLSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHNYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=101440 HPOKI898_RS02300 WP_025276751.1 473805..474980(-) (rarA) [Helicobacter pylori oki898]
ATGAGCCTGACTTCGCTTTTAAACCCCACAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGCAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGGGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAGCTAGAGGATTTGCGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGTTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCCAAAATAGAAAATCCTATCACTTTAGAAACCCTACAATCCTTACGGCCTCATA
GCCTGAATGACGGATCTTATAGCGATGATACGCATTATAACCTTACTAGCGCGTTAATCAAATCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGTGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGCTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTTCTGCCTAACGCTAA
AGACTACCTTTACCCGCACAATTATAACGGCTATGTCAAACAAGATTATTTAGAAAAACCCCTAAATCTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAAATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.621

100

0.396

Multiple sequence alignment