Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HPOKI828_RS07645 Genome accession   NZ_CP006826
Coordinates   1586940..1587221 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   B5Z6D6
Organism   Helicobacter pylori oki828     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1581940..1592221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI828_RS07630 (HPOKI828_07960) - 1582650..1583990 (-) 1341 WP_025223395.1 COG3014 family protein -
  HPOKI828_RS07635 (HPOKI828_07965) comB4 1584311..1586674 (-) 2364 WP_025223396.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPOKI828_RS07640 (HPOKI828_07970) comB3 1586677..1586940 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  HPOKI828_RS07645 (HPOKI828_07975) comB2 1586940..1587221 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HPOKI828_RS07650 (HPOKI828_07980) - 1587366..1588193 (-) 828 WP_025223397.1 DUF5718 family protein -
  HPOKI828_RS07655 (HPOKI828_07985) - 1588284..1589336 (-) 1053 WP_025223398.1 MnmA/TRMU family protein -
  HPOKI828_RS07660 (HPOKI828_07990) dnaG 1589333..1591012 (-) 1680 WP_025223399.1 DNA primase -
  HPOKI828_RS07665 (HPOKI828_07995) groES 1591299..1591655 (+) 357 WP_025223400.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=101417 HPOKI828_RS07645 WP_001272686.1 1586940..1587221(-) (comB2) [Helicobacter pylori oki828]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=101417 HPOKI828_RS07645 WP_001272686.1 1586940..1587221(-) (comB2) [Helicobacter pylori oki828]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCTTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATTCTTGGCGTGGTGTTTGGGATTTTTTTGTTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z6D6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989