Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   ABNN70_RS13145 Genome accession   NZ_CP159510
Coordinates   2738637..2740112 (-) Length   491 a.a.
NCBI ID   WP_353948042.1    Uniprot ID   -
Organism   Sporolactobacillus sp. Y61     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2733637..2745112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNN70_RS13125 (ABNN70_13125) - 2733838..2734104 (-) 267 WP_129928286.1 IreB family regulatory phosphoprotein -
  ABNN70_RS13130 (ABNN70_13130) alaS 2734140..2736782 (-) 2643 WP_353948040.1 alanine--tRNA ligase -
  ABNN70_RS13135 (ABNN70_13135) - 2737196..2738257 (-) 1062 WP_129928284.1 AI-2E family transporter -
  ABNN70_RS13140 (ABNN70_13140) - 2738327..2738524 (-) 198 WP_353948041.1 hypothetical protein -
  ABNN70_RS13145 (ABNN70_13145) recD2 2738637..2740112 (-) 1476 WP_353948042.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ABNN70_RS13150 (ABNN70_13150) - 2740022..2740939 (-) 918 WP_353948043.1 helix-hairpin-helix domain-containing protein -
  ABNN70_RS13155 (ABNN70_13155) - 2740963..2741637 (-) 675 WP_353948044.1 tetratricopeptide repeat protein -
  ABNN70_RS13160 (ABNN70_13160) mnmA 2741811..2742944 (-) 1134 WP_353948045.1 tRNA 2-thiouridine(34) synthase MnmA -
  ABNN70_RS13165 (ABNN70_13165) - 2742941..2744107 (-) 1167 WP_353948046.1 cysteine desulfurase family protein -
  ABNN70_RS13170 (ABNN70_13170) - 2744130..2744552 (-) 423 WP_353948047.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 491 a.a.        Molecular weight: 54918.56 Da        Isoelectric Point: 5.1112

>NTDB_id=1013963 ABNN70_RS13145 WP_353948042.1 2738637..2740112(-) (recD2) [Sporolactobacillus sp. Y61]
MDQLEDDGKIVREGNDVYLPELYYAEKGIVTSIQRLTEGSEEEEYSEAEFMEALGKVEDRLSMQYADSQQKAIRQAIRSP
LMVLTGGPGTGKTTVIHGIVEVYAELNSLSLEVKDYDSEHPYPILLVAPTGRAAKRMKESTGLPAVTIHRLLGWTGGANY
AHDQDDPVEGKLIIVDEMSMVDIWLANQLLKSLPDDMKMVIVGDEDQLPSVGPGQVLADLIQSGVIPVVRLTDIFRQAKG
SSIIELAHQIKEGQLKDLTAKRDDRRFFHCHQAQVTEAVCQIAKGAEKKGYQPKDIQVLAPIYRGNAGIEKLNERLQELF
NPPSDQKRGLTFGDHIFRVHDKVLQLMNNPDDQVFNGDIGEIISILRAKETTDNEDTVIVSFDGIEVKYLRHDLNQLTLA
YCCSIHKAQGSEFPIVILPVVKGYHRMLKRNLIYTAVTRSKEYLMICGNEEAIRTAVQRNDVDRRHSNLAAKLRERMSLP
DAGPLSLSDDS

Nucleotide


Download         Length: 1476 bp        

>NTDB_id=1013963 ABNN70_RS13145 WP_353948042.1 2738637..2740112(-) (recD2) [Sporolactobacillus sp. Y61]
ATGGATCAGCTGGAAGATGATGGGAAAATTGTCCGTGAGGGTAACGATGTTTATCTGCCGGAACTGTACTATGCAGAGAA
GGGCATTGTGACCAGTATTCAAAGACTGACGGAGGGCTCCGAGGAAGAGGAGTACTCCGAAGCTGAATTTATGGAAGCGC
TCGGAAAAGTGGAGGACAGGTTGTCGATGCAGTATGCCGACAGTCAGCAGAAGGCGATCCGCCAGGCGATCCGGTCGCCT
CTGATGGTTCTGACAGGGGGCCCGGGGACGGGGAAAACCACCGTCATTCACGGTATTGTGGAGGTCTATGCGGAGCTGAA
CAGTCTTTCACTTGAAGTGAAAGATTACGACAGTGAACACCCTTACCCCATTCTGCTCGTTGCCCCTACCGGACGGGCAG
CCAAACGAATGAAAGAGTCTACGGGACTTCCGGCCGTGACCATACACCGATTGCTCGGATGGACGGGAGGAGCAAATTAT
GCACATGATCAGGATGATCCGGTTGAGGGCAAACTGATCATTGTTGATGAAATGTCGATGGTAGACATCTGGCTTGCCAA
TCAGCTGCTCAAATCGCTTCCTGATGACATGAAAATGGTGATTGTAGGCGATGAAGATCAGCTGCCATCAGTCGGCCCGG
GTCAGGTACTGGCGGATCTGATCCAGTCCGGCGTCATACCGGTTGTCCGGCTGACGGATATTTTCCGGCAGGCTAAAGGC
TCCTCAATTATCGAACTGGCTCACCAAATAAAAGAGGGACAGTTAAAGGATCTTACAGCTAAACGTGATGACCGGCGATT
TTTCCATTGCCATCAGGCACAGGTCACCGAAGCCGTCTGCCAGATTGCAAAAGGCGCAGAGAAGAAGGGTTATCAGCCGA
AGGACATCCAGGTTCTTGCACCCATATACCGGGGAAATGCCGGGATCGAGAAACTGAACGAAAGACTGCAGGAACTTTTT
AATCCGCCTTCTGATCAGAAACGCGGTCTGACGTTCGGTGATCACATATTCCGGGTTCATGATAAAGTGCTGCAGCTGAT
GAATAATCCTGATGACCAGGTTTTTAACGGCGATATTGGTGAGATTATATCGATACTCCGGGCAAAAGAGACGACAGATA
ACGAAGACACCGTCATCGTTTCTTTTGACGGTATTGAAGTCAAATATCTCCGGCATGATTTAAATCAACTGACACTTGCT
TATTGCTGTTCCATACATAAAGCCCAGGGCAGCGAATTTCCGATTGTCATTCTTCCGGTGGTTAAGGGCTATCACCGGAT
GCTGAAACGCAATCTGATTTATACGGCTGTCACACGCAGCAAAGAGTATCTGATGATCTGCGGTAATGAGGAAGCGATCA
GGACTGCTGTCCAGCGTAACGATGTCGACCGGCGCCACTCCAATCTGGCTGCTAAACTTCGTGAGCGGATGAGCCTGCCC
GATGCCGGGCCACTCTCTCTTTCTGATGACAGCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(65-272)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(400-447)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(312-382)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.965

97.963

0.558

Multiple sequence alignment