Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ABVJ71_RS04285 Genome accession   NZ_CP159358
Coordinates   817472..818251 (-) Length   259 a.a.
NCBI ID   WP_353856555.1    Uniprot ID   -
Organism   Bacillus sp. Bos-x628     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 812472..823251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVJ71_RS04255 fliH 812595..813350 (-) 756 WP_353855757.1 flagellar assembly protein FliH -
  ABVJ71_RS04260 fliG 813343..814359 (-) 1017 WP_353855758.1 flagellar motor switch protein FliG -
  ABVJ71_RS04265 fliF 814371..815960 (-) 1590 WP_353855759.1 flagellar basal-body MS-ring/collar protein FliF -
  ABVJ71_RS04270 fliE 816010..816327 (-) 318 WP_353855760.1 flagellar hook-basal body complex protein FliE -
  ABVJ71_RS04275 flgC 816339..816791 (-) 453 WP_353855761.1 flagellar basal body rod protein FlgC -
  ABVJ71_RS04280 flgB 816791..817180 (-) 390 WP_353855762.1 flagellar basal body rod protein FlgB -
  ABVJ71_RS04285 codY 817472..818251 (-) 780 WP_353856555.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ABVJ71_RS04290 hslU 818286..819686 (-) 1401 WP_353855763.1 HslU--HslV peptidase ATPase subunit -
  ABVJ71_RS04295 hslV 819703..820248 (-) 546 WP_353855764.1 ATP-dependent protease subunit HslV -
  ABVJ71_RS04300 xerC 820263..821180 (-) 918 WP_353855765.1 tyrosine recombinase XerC -
  ABVJ71_RS04305 trmFO 821243..822547 (-) 1305 WP_353855766.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29001.29 Da        Isoelectric Point: 4.7873

>NTDB_id=1013362 ABVJ71_RS04285 WP_353856555.1 817472..818251(-) (codY) [Bacillus sp. Bos-x628]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDRFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1013362 ABVJ71_RS04285 WP_353856555.1 817472..818251(-) (codY) [Bacillus sp. Bos-x628]
ATGGCGTTATTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGCTGCAGCGGGGAAACCAGTTAATTTCAAAGAGAT
GGCGGAAACACTTAGAGATGTTATTGATTCAAACATATTTGTGTTAAGCAGAAGAGGGAAACTTCTCGGTTATTCAATCA
ATCAACAGATTGAAAATGCCCGTATGAAAAAAATGCTTGAAGACCGTCAATTCCCAGAAGAATACACAAAAAGCCTGTTT
AATATTCCTGAAACGTCTTCTAATTTAGATATCAACAGTGAATATACGGCTTTCCCAATTGAGAACCGTGACTTATTCCA
ATCAGGTTTGACAACCATAGTGCCAATTATCGGGGGCGGAGATCGCTTAGGAACTTTAATTCTGTCTCGCCTGCAAGATC
GGTTTACAGATGATGATTTAATTCTTGCTGAATACGGAGCAACGGTCGTTGGGATGGAAATTCTCCGTGAAAAGGCAGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCTGTAGTACAAATGGCGATTAGTTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGATGGAAATGAAGGTCTGCTCGTTGCAAGTAAAATCGCTGACCGTGTAGGCATTACTC
GTTCAGTGATCGTAAACGCTTTGCGTAAACTTGAAAGTGCGGGTGTTATCGAATCTCGTTCTCTCGGCATGAAAGGAACA
TACATTAAAGTGTTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCCCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment