Detailed information NTG1013350

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JLZ95_RS05225
• Genome accession: NZ_LR883012
• Coordinates: 1103794..1104786 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate L4_E1441_ETEC
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1098794..1109786

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JLZ95_RS05195 (ETECE1441_01066)	ispD	1098855..1099565 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JLZ95_RS05200 (ETECE1441_01067)	ispF	1099565..1100044 (+)	480	WP_001735626.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JLZ95_RS05205 (ETECE1441_01068)	truD	1100041..1101090 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
JLZ95_RS05210 (ETECE1441_01069)	surE	1101071..1101832 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
JLZ95_RS05215 (ETECE1441_01070)	pcm	1101826..1102452 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JLZ95_RS05220 (ETECE1441_01071)	nlpD	1102637..1103731 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
JLZ95_RS05225 (ETECE1441_01072)	rpoS	1103794..1104786 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JLZ95_RS05230 (ETECE1441_01073)	ygbN	1104880..1106244 (-)	1365	WP_001735624.1	GntP family transporter	-
JLZ95_RS05235 (ETECE1441_01074)	ygbM	1106333..1107109 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
JLZ95_RS05240 (ETECE1441_01075)	-	1107114..1107650 (-)	537	WP_050438173.1	aldolase	-
JLZ95_RS05250 (ETECE1441_01078)	-	1108452..1108583 (-)	132	Protein_1049	serine/threonine protein phosphatase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1013350 JLZ95_RS05225 WP_000081550.1 1103794..1104786(+) (rpoS) [Escherichia coli isolate L4_E1441_ETEC]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1013350 JLZ95_RS05225 WP_000081550.1 1103794..1104786(+) (rpoS) [Escherichia coli isolate L4_E1441_ETEC]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715