Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   HPOKI422_RS05880 Genome accession   NZ_CP006824
Coordinates   1241714..1242487 (+) Length   257 a.a.
NCBI ID   WP_015428166.1    Uniprot ID   -
Organism   Helicobacter pylori oki422     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1236714..1247487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI422_RS05875 (HPOKI422_06120) hopL 1238002..1241701 (+) 3700 Protein_1134 Hop family outer membrane protein HopL -
  HPOKI422_RS05880 (HPOKI422_06125) proC 1241714..1242487 (+) 774 WP_015428166.1 pyrroline-5-carboxylate reductase Machinery gene
  HPOKI422_RS05885 (HPOKI422_06130) fic 1242514..1243047 (+) 534 WP_000549887.1 protein adenylyltransferase Fic -
  HPOKI422_RS08165 (HPOKI422_06135) - 1243062..1243825 (-) 764 Protein_1137 TauD/TfdA family dioxygenase -
  HPOKI422_RS05900 (HPOKI422_06140) - 1243831..1244289 (-) 459 WP_025276262.1 glycine-rich domain-containing protein -
  HPOKI422_RS05905 (HPOKI422_06145) ybeY 1244387..1244815 (-) 429 WP_025276263.1 rRNA maturation RNase YbeY -
  HPOKI422_RS05910 (HPOKI422_06150) - 1244870..1245364 (-) 495 WP_015428168.1 flavodoxin -
  HPOKI422_RS05915 (HPOKI422_06155) - 1245456..1246037 (-) 582 WP_001879496.1 DedA family protein -
  HPOKI422_RS05920 (HPOKI422_06160) ccoS 1246163..1246354 (+) 192 WP_001090956.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  HPOKI422_RS05925 (HPOKI422_06165) - 1246380..1247351 (+) 972 WP_015428169.1 NAD(P)-binding domain-containing protein -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28192.68 Da        Isoelectric Point: 7.6640

>NTDB_id=101328 HPOKI422_RS05880 WP_015428166.1 1241714..1242487(+) (proC) [Helicobacter pylori oki422]
MEILQFIGYGNMAQAILEGSHETLSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKEAIDTHQKFVFLLFKPYNLKDFN
YQGQAQSVLSALAGVNFEALSNAINSLHYLKCMPNIASKFALSSTAVCEKSVAPSISEKALSIIESFGNCVRVGNEEQVD
ASIATNGSALAFLSLVASSLKDAGIREGLNARDSLELVKMSFKGFAKLLEKERPEMIIEQICTPKGATIEGLSVLEKKGV
RGAFIEACHESVKKMRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=101328 HPOKI422_RS05880 WP_015428166.1 1241714..1242487(+) (proC) [Helicobacter pylori oki422]
ATGGAAATCTTACAATTCATCGGCTATGGGAATATGGCTCAAGCGATTTTAGAAGGCTCTCATGAAACTTTATCCAAGCG
TTTTATTTTAGAAATCACCGGAAGAAACCCTGAAAAAATCGCCCCCTTTTTACAAGAAAAAAACATTCAAGCCCAAATCG
TGCCTTACAAAGAAGCTATTGATACACACCAAAAATTCGTGTTTTTACTTTTCAAACCTTATAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCCCAAAGCGTTTTGAGCGCGTTAGCCGGGGTAAATTTTGAAGCTTTAAGCAATGCGATCAATTCTTT
ACATTACTTAAAATGCATGCCCAACATTGCGAGCAAATTCGCCCTTTCTTCTACGGCGGTGTGTGAAAAATCGGTTGCAC
CTTCAATAAGCGAGAAAGCTTTGAGTATTATTGAAAGTTTTGGGAATTGCGTGCGAGTGGGAAACGAAGAGCAGGTGGAT
GCCAGTATAGCGACCAATGGGAGCGCGCTCGCTTTTTTAAGCTTGGTAGCGAGCAGTTTGAAAGACGCCGGCATTAGAGA
GGGCTTGAACGCTAGAGATTCTTTAGAATTGGTAAAAATGAGTTTTAAAGGCTTTGCCAAGCTGTTAGAAAAAGAACGCC
CAGAAATGATTATAGAGCAAATTTGCACCCCTAAAGGCGCCACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTTATAGAAGCTTGCCATGAAAGCGTAAAAAAAATGCGCCTCTAA

Domains

Predicted by InterProScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.008

98.833

0.366

Multiple sequence alignment