Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HPOKI422_RS02315 Genome accession   NZ_CP006824
Coordinates   471926..473101 (-) Length   391 a.a.
NCBI ID   WP_025366375.1    Uniprot ID   -
Organism   Helicobacter pylori oki422     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 466926..478101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI422_RS02280 (HPOKI422_02365) - 467252..467566 (+) 315 WP_000868000.1 hypothetical protein -
  HPOKI422_RS02285 (HPOKI422_02370) - 467544..468311 (+) 768 WP_025366372.1 RNA polymerase sigma factor FliA -
  HPOKI422_RS02290 (HPOKI422_02375) fliM 468304..469368 (+) 1065 WP_000763575.1 flagellar motor switch protein FliM -
  HPOKI422_RS02295 (HPOKI422_02380) fliY 469372..470235 (+) 864 WP_025366373.1 flagellar motor switch protein FliY -
  HPOKI422_RS02300 (HPOKI422_02385) - 470264..470800 (+) 537 WP_025275748.1 YhcH/YjgK/YiaL family protein -
  HPOKI422_RS02305 (HPOKI422_02390) - 470797..471294 (+) 498 WP_023526732.1 DUF2147 domain-containing protein -
  HPOKI422_RS02310 (HPOKI422_02395) fur 471314..471766 (-) 453 WP_025366374.1 ferric iron uptake transcriptional regulator -
  HPOKI422_RS02315 (HPOKI422_02400) rarA 471926..473101 (-) 1176 WP_025366375.1 replication-associated recombination protein A Machinery gene
  HPOKI422_RS02320 (HPOKI422_02405) - 473098..473469 (-) 372 WP_025276752.1 heat shock protein transcriptional repressor HspR -
  HPOKI422_RS02325 (HPOKI422_02410) - 473479..474345 (-) 867 WP_025366376.1 DnaJ family protein -
  HPOKI422_RS02330 (HPOKI422_02415) - 474513..475763 (+) 1251 WP_025276754.1 hypothetical protein -
  HPOKI422_RS02335 (HPOKI422_02420) - 475858..476694 (-) 837 WP_080275966.1 5'-3' exonuclease -
  HPOKI422_RS02340 (HPOKI422_02430) - 476950..477846 (-) 897 WP_025275754.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43759.43 Da        Isoelectric Point: 8.5302

>NTDB_id=101314 HPOKI422_RS02315 WP_025366375.1 471926..473101(-) (rarA) [Helicobacter pylori oki422]
MSLTSLLNPTSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLGRPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCVK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIENPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLVRLIAGGENPEFIARRLVVFASEDIGNANPNALNLASSCLFAVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHNYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=101314 HPOKI422_RS02315 WP_025366375.1 471926..473101(-) (rarA) [Helicobacter pylori oki422]
ATGAGCCTGACTTCGCTTTTAAACCCCACAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGCAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGGGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAGCTAGAGGATTTGCGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGTTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGTGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCCAAAATAGAAAATCCTATCACTTTAGAAACCCTACAATCCTTACGGCCTCATA
GCCTGAATGACGGATCTTATAGCGATGATACGCATTATAACCTTACTAGCGCGTTAATCAAATCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGTGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGTTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCTCTTCTTGCTTGTTTGCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATTATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCGCCTAAATCCAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTTCTGCCTAACGCTAA
AGACTACCTTTACCCGCACAATTATAACGGCTATGTCAAACAAGATTATTTAGAAAAACCCCTAAATCTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAAATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.379

100

0.394

Multiple sequence alignment