Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HPOKI154_RS02120 Genome accession   NZ_CP006823
Coordinates   418425..419600 (-) Length   391 a.a.
NCBI ID   WP_025222623.1    Uniprot ID   -
Organism   Helicobacter pylori oki154     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 413425..424600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI154_RS02085 (HPOKI154_02180) - 413744..414058 (+) 315 WP_000868000.1 hypothetical protein -
  HPOKI154_RS02090 (HPOKI154_02185) - 414036..414812 (+) 777 WP_000602376.1 RNA polymerase sigma factor FliA -
  HPOKI154_RS02095 (HPOKI154_02190) fliM 414805..415869 (+) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  HPOKI154_RS02100 (HPOKI154_02195) fliY 415873..416736 (+) 864 WP_025222620.1 flagellar motor switch protein FliY -
  HPOKI154_RS02105 (HPOKI154_02200) - 416763..417299 (+) 537 WP_025313730.1 YhcH/YjgK/YiaL family protein -
  HPOKI154_RS02110 (HPOKI154_02205) - 417296..417793 (+) 498 WP_025366772.1 DUF2147 domain-containing protein -
  HPOKI154_RS02115 (HPOKI154_02210) fur 417813..418265 (-) 453 WP_000825003.1 ferric iron uptake transcriptional regulator -
  HPOKI154_RS02120 (HPOKI154_02215) rarA 418425..419600 (-) 1176 WP_025222623.1 replication-associated recombination protein A Machinery gene
  HPOKI154_RS02125 (HPOKI154_02220) - 419597..419968 (-) 372 WP_000332994.1 heat shock protein transcriptional repressor HspR -
  HPOKI154_RS02130 (HPOKI154_02225) - 419978..420844 (-) 867 WP_025222624.1 DnaJ family protein -
  HPOKI154_RS02135 (HPOKI154_02230) - 421012..422262 (+) 1251 WP_025222625.1 hypothetical protein -
  HPOKI154_RS02140 (HPOKI154_02235) - 422327..423193 (-) 867 WP_080274444.1 5'-3' exonuclease -
  HPOKI154_RS02145 (HPOKI154_02245) - 423419..424315 (-) 897 WP_025222626.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43744.40 Da        Isoelectric Point: 7.4324

>NTDB_id=101260 HPOKI154_RS02120 WP_025222623.1 418425..419600(-) (rarA) [Helicobacter pylori oki154]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIACMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCTK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDLITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLACLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKNYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=101260 HPOKI154_RS02120 WP_025222623.1 418425..419600(-) (rarA) [Helicobacter pylori oki154]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCTTGG
CTCAAATCATCGCTTGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCCAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCACTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCCAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCTTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGTGATGATACGCATTATAATCTTACTAGCGCTTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGTGCTTGATTGCTGGCGGGGAAAACCCGGAGTTTATTGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCTATTAATCAGGCTTTGGATTGTGTTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AAACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

36.65

100

0.386