Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   JOA52_RS04850 Genome accession   NZ_LR881953
Coordinates   1110639..1112006 (-) Length   455 a.a.
NCBI ID   WP_030574145.1    Uniprot ID   -
Organism   Streptomyces sp. KY75 isolate Streptomyces sp. KY75     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1105639..1117006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOA52_RS04825 (STKY75_1083) - 1105879..1106223 (-) 345 WP_030574135.1 DUF6167 family protein -
  JOA52_RS04830 (STKY75_1084) - 1106231..1106689 (-) 459 WP_093692836.1 DUF948 domain-containing protein -
  JOA52_RS04835 (STKY75_1085) - 1106887..1109091 (+) 2205 WP_030574141.1 AAA family ATPase -
  JOA52_RS04840 (STKY75_1086) rpsD 1109109..1109723 (-) 615 WP_015607373.1 30S ribosomal protein S4 -
  JOA52_RS04845 (STKY75_1087) - 1109915..1110616 (+) 702 WP_202590503.1 DUF2470 domain-containing protein -
  JOA52_RS04850 (STKY75_1088) rarA 1110639..1112006 (-) 1368 WP_030574145.1 replication-associated recombination protein A Machinery gene
  JOA52_RS04855 (STKY75_1089) - 1112059..1112697 (-) 639 WP_030574147.1 vitamin K epoxide reductase family protein -
  JOA52_RS04860 (STKY75_1090) hisS 1112974..1114236 (-) 1263 WP_076967813.1 histidine--tRNA ligase -
  JOA52_RS04865 (STKY75_1091) - 1114258..1114947 (-) 690 WP_030574149.1 MBL fold metallo-hydrolase -
  JOA52_RS04870 (STKY75_1092) - 1115115..1115909 (+) 795 WP_030574151.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48487.93 Da        Isoelectric Point: 6.4504

>NTDB_id=1012453 JOA52_RS04850 WP_030574145.1 1110639..1112006(-) (rarA) [Streptomyces sp. KY75 isolate Streptomyces sp. KY75]
MEPDLFTAAAEDRQEKDPSSSPLAVRMRPRVLDEVVGQQHLLKPGSPLRRLVEGSGGPAGASSVILWGPPGTGKTTLAYV
VSKATNKRFVELSAITAGVKEVRAVIESARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFS
IISPLLSRSLLLTLEPLTDDDLRDLLRRALTDERGLGGAVSLPEDAEAHLLRIAGGDARRALTALEAAAGAALATHEAEI
TLETVEATVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADHTALP
TAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATLAISAAQEDVRKGLAGPVPAHLRDGHYKGAAKLGHAQGYVYP
HDVQGGIAAQQYAPDAVRDRLYYTPTRHGAEARYADVVERVRERLGRTPKGADPS

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1012453 JOA52_RS04850 WP_030574145.1 1110639..1112006(-) (rarA) [Streptomyces sp. KY75 isolate Streptomyces sp. KY75]
GTGGAGCCCGACCTCTTTACCGCAGCCGCCGAAGACCGCCAGGAGAAGGACCCGTCCAGCAGCCCCCTCGCTGTCCGGAT
GCGTCCGCGCGTCCTCGACGAGGTCGTCGGCCAGCAGCATCTGCTGAAGCCGGGCTCGCCGCTGCGCCGGCTCGTCGAGG
GGAGCGGCGGTCCGGCCGGTGCCTCGTCGGTGATCCTGTGGGGCCCGCCCGGCACCGGGAAGACGACTCTGGCGTACGTG
GTCAGCAAGGCCACCAACAAGCGCTTCGTGGAGCTCTCCGCGATCACCGCGGGCGTCAAGGAGGTCCGGGCCGTCATCGA
GAGCGCGCGCCGCGCCACCGGTGGCTTCGGCAAGGAGACCGTCCTCTTCCTGGACGAGATCCACCGCTTCTCCAAGGCCC
AGCAGGACTCCCTGCTCCCCGCCGTGGAGAACCGCTGGGTGACCCTGATCGCCGCCACCACGGAGAATCCGTACTTCTCG
ATCATCTCCCCGCTGCTCTCGCGCTCCCTGCTGCTCACCCTGGAGCCGCTCACCGACGACGACCTGCGGGATCTGCTGCG
CCGGGCGCTGACCGACGAGCGCGGGCTCGGCGGAGCCGTCTCCCTCCCCGAGGACGCGGAGGCGCACCTCCTGCGCATCG
CGGGCGGCGACGCGCGCCGGGCGCTCACGGCGCTGGAGGCGGCGGCCGGTGCGGCGCTCGCCACGCACGAGGCGGAGATC
ACGCTGGAGACGGTCGAGGCGACCGTCGACCGGGCCGCCGTGAAGTACGACCGCGACGGCGACCAGCACTACGACGTGGC
CAGCGCGCTCATCAAGTCCATCCGCGGCTCCGACGTGGACGCCGCCCTGCACTATCTGGCCCGGATGATCGAGGCGGGGG
AGGACCCCCGGTTCATCGCCCGGCGGCTGATGATCTCCGCCAGCGAGGACATCGGCCTCGCCGACCACACCGCCCTGCCG
ACGGCGGTGGCGGCCGCCCAGGCCGTCGCGATGATCGGCTTCCCGGAGGCGGCGCTGACCCTCAGCCACGCCACGATCGC
CCTCGCGCTCGCGCCCAAGTCCAACGCGGCGACGCTCGCGATCTCCGCCGCGCAGGAGGACGTACGGAAGGGGCTCGCGG
GCCCCGTCCCGGCCCATCTGCGCGACGGTCATTACAAGGGCGCGGCCAAGCTCGGCCACGCCCAGGGCTATGTCTATCCG
CACGACGTCCAGGGCGGTATCGCTGCCCAGCAGTACGCGCCGGACGCGGTCCGCGACCGGCTGTACTACACCCCCACCCG
GCACGGCGCCGAGGCGCGGTACGCGGACGTGGTCGAGCGGGTCCGCGAGCGCCTGGGCCGTACTCCCAAAGGCGCGGACC
CGTCCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(276-441)

AAA C-terminal domain (AAA_assoc_2)

(199-275)

ATPase family associated with various cellular activities (AAA) (AAA)

(64-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

44.419

94.505

0.42