Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HPOKI128_RS02120 Genome accession   NZ_CP006822
Coordinates   419065..420240 (-) Length   391 a.a.
NCBI ID   WP_025287978.1    Uniprot ID   -
Organism   Helicobacter pylori oki128     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 414065..425240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI128_RS02085 (HPOKI128_02170) - 414383..414697 (+) 315 WP_000868000.1 hypothetical protein -
  HPOKI128_RS02090 (HPOKI128_02175) - 414675..415451 (+) 777 WP_025287974.1 RNA polymerase sigma factor FliA -
  HPOKI128_RS02095 (HPOKI128_02180) fliM 415444..416508 (+) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  HPOKI128_RS02100 (HPOKI128_02185) fliY 416512..417375 (+) 864 WP_025287975.1 flagellar motor switch protein FliY -
  HPOKI128_RS02105 (HPOKI128_02190) - 417403..417939 (+) 537 WP_025287976.1 YhcH/YjgK/YiaL family protein -
  HPOKI128_RS02110 (HPOKI128_02195) - 417936..418433 (+) 498 WP_025287977.1 DUF2147 domain-containing protein -
  HPOKI128_RS02115 (HPOKI128_02200) fur 418453..418905 (-) 453 WP_000825003.1 ferric iron uptake transcriptional regulator -
  HPOKI128_RS02120 (HPOKI128_02205) rarA 419065..420240 (-) 1176 WP_025287978.1 replication-associated recombination protein A Machinery gene
  HPOKI128_RS02125 (HPOKI128_02210) - 420237..420608 (-) 372 WP_000332994.1 heat shock protein transcriptional repressor HspR -
  HPOKI128_RS02130 (HPOKI128_02215) - 420618..421484 (-) 867 WP_025222624.1 DnaJ family protein -
  HPOKI128_RS02135 (HPOKI128_02220) - 421652..422902 (+) 1251 WP_025287979.1 hypothetical protein -
  HPOKI128_RS02140 (HPOKI128_02225) - 422967..423833 (-) 867 WP_080275488.1 5'-3' exonuclease -
  HPOKI128_RS02145 (HPOKI128_02230) - 424067..424963 (-) 897 WP_025287981.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43886.48 Da        Isoelectric Point: 7.4747

>NTDB_id=101221 HPOKI128_RS02120 WP_025287978.1 419065..420240(-) (rarA) [Helicobacter pylori oki128]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIACMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCTK
ALTLLKKQIEPSAKTYLLNNSTGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=101221 HPOKI128_RS02120 WP_025287978.1 419065..420240(-) (rarA) [Helicobacter pylori oki128]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCTTGG
CTCAAATCATCGCTTGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCCAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCACTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCCAGCGCTAAAACCTATCTTTTAAACAACAGCACTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCCCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCGCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAATCCGGAGTTTATTGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATTTGGCTTGTTCGCCCAAGTCTAACACGGCCTAT
AGAGCGATTAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.379

100

0.394

Multiple sequence alignment