Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   HPOKI112_RS05895 Genome accession   NZ_CP006821
Coordinates   1246599..1247372 (+) Length   257 a.a.
NCBI ID   WP_025309951.1    Uniprot ID   -
Organism   Helicobacter pylori oki112     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1241599..1252372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI112_RS05890 (HPOKI112_06125) hopL 1242899..1246585 (+) 3687 WP_025309950.1 Hop family outer membrane protein HopL -
  HPOKI112_RS05895 (HPOKI112_06130) proC 1246599..1247372 (+) 774 WP_025309951.1 pyrroline-5-carboxylate reductase Machinery gene
  HPOKI112_RS05900 (HPOKI112_06135) fic 1247399..1247902 (+) 504 WP_025309952.1 protein adenylyltransferase Fic -
  HPOKI112_RS05905 (HPOKI112_06140) ybeY 1247916..1248338 (-) 423 WP_025309953.1 rRNA maturation RNase YbeY -
  HPOKI112_RS05910 (HPOKI112_06145) - 1248393..1248887 (-) 495 WP_015428168.1 flavodoxin -
  HPOKI112_RS05915 (HPOKI112_06150) - 1248979..1249560 (-) 582 WP_001879496.1 DedA family protein -
  HPOKI112_RS05920 (HPOKI112_06155) ccoS 1249685..1249876 (+) 192 WP_001090943.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  HPOKI112_RS05925 (HPOKI112_06160) - 1249902..1250873 (+) 972 WP_015428169.1 NAD(P)-binding domain-containing protein -
  HPOKI112_RS05930 (HPOKI112_06165) - 1250880..1252040 (-) 1161 WP_025309954.1 HP1165 family MFS efflux transporter -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28232.79 Da        Isoelectric Point: 7.6640

>NTDB_id=101207 HPOKI112_RS05895 WP_025309951.1 1246599..1247372(+) (proC) [Helicobacter pylori oki112]
MEILQFIGYGNMAQAILEGSHEILSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKEAIDTHQKFVFLLFKPYNLKDFN
YQGQAQSVLSALAGVNFEALSNAINSLHYLKCMPNIASKFALSSTAVCEKSVVPSISEKALSIIESFGNCVRVGNEEQVD
ASIATNGSALAFLSLVASSLKDAGIREGLNARDSLELVKMSFKGFAKLLEKERPEMIIEQICTPKGATIEGLSVLEKKGV
RGAFIEACHESVKKMRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=101207 HPOKI112_RS05895 WP_025309951.1 1246599..1247372(+) (proC) [Helicobacter pylori oki112]
ATGGAAATCTTACAATTCATCGGCTATGGGAATATGGCTCAAGCGATTTTAGAAGGCTCTCATGAAATTTTATCCAAGCG
TTTTATTTTAGAGATTACTGGGCGAAATCCTGAAAAAATCGCCCCCTTTTTACAAGAAAAAAACATTCAAGCCCAAATCG
TGCCTTACAAAGAAGCTATTGATACACACCAAAAATTCGTGTTTTTACTTTTCAAACCTTATAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCCCAAAGCGTTTTGAGCGCGTTAGCCGGGGTAAATTTTGAAGCTTTAAGCAATGCGATCAATTCTTT
ACATTACTTAAAATGCATGCCCAACATTGCGAGCAAATTCGCCCTTTCTTCTACGGCGGTGTGTGAAAAATCGGTTGTGC
CTTCAATAAGCGAGAAAGCTTTGAGTATTATTGAAAGTTTTGGGAATTGCGTGCGAGTGGGAAACGAAGAGCAGGTGGAT
GCCAGTATAGCGACCAATGGGAGCGCGCTCGCTTTTTTAAGCTTGGTAGCGAGCAGTTTGAAAGACGCCGGCATTAGAGA
GGGCTTGAACGCTAGAGATTCTTTAGAATTGGTAAAAATGAGTTTTAAAGGCTTTGCCAAGCTGTTAGAAAAAGAACGCC
CAGAAATGATTATAGAGCAAATTTGCACCCCTAAAGGCGCCACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTTATAGAAGCTTGCCATGAAAGCGTAAAAAAAATGCGCCTCTAA

Domains

Predicted by InterProScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.008

98.833

0.366

Multiple sequence alignment