Detailed information NTG1011917

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ABUH86_RS08420
• Genome accession: NZ_CP158669
• Coordinates: 1654579..1655358 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain XY40-1
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1649579..1660358

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABUH86_RS08400 (ABUH86_08400)	trmFO	1650266..1651573 (+)	1308	WP_032871468.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ABUH86_RS08405 (ABUH86_08405)	xerC	1651643..1652560 (+)	918	WP_032871470.1	tyrosine recombinase XerC	-
ABUH86_RS08410 (ABUH86_08410)	hslV	1652576..1653121 (+)	546	WP_014417767.1	ATP-dependent protease subunit HslV	-
ABUH86_RS08415 (ABUH86_08415)	hslU	1653129..1654541 (+)	1413	WP_353408069.1	HslU--HslV peptidase ATPase subunit	-
ABUH86_RS08420 (ABUH86_08420)	codY	1654579..1655358 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ABUH86_RS08425 (ABUH86_08425)	flgB	1655712..1656101 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
ABUH86_RS08430 (ABUH86_08430)	flgC	1656101..1656553 (+)	453	WP_015239851.1	flagellar basal body rod protein FlgC	-
ABUH86_RS08435 (ABUH86_08435)	fliE	1656564..1656884 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
ABUH86_RS08440 (ABUH86_08440)	fliF	1656927..1658537 (+)	1611	WP_076424137.1	flagellar basal-body MS-ring/collar protein FliF	-
ABUH86_RS08445 (ABUH86_08445)	fliG	1658550..1659566 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ABUH86_RS08450 (ABUH86_08450)	fliH	1659559..1660314 (+)	756	WP_015239852.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1011917 ABUH86_RS08420 WP_003154263.1 1654579..1655358(+) (codY) [Bacillus velezensis strain XY40-1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1011917 ABUH86_RS08420 WP_003154263.1 1654579..1655358(+) (codY) [Bacillus velezensis strain XY40-1]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACACTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471