Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   H1W94_RS08670 Genome accession   NZ_LR822041
Coordinates   1667982..1668275 (-) Length   97 a.a.
NCBI ID   WP_011226625.1    Uniprot ID   Q5M2G2
Organism   Streptococcus thermophilus isolate STH_CIRM_1122     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1662982..1673275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W94_RS08635 (STHERMO_1924) - 1663380..1663828 (-) 449 Protein_1638 CAAX protease -
  H1W94_RS09980 (STHERMO_1925) - 1663902..1664327 (-) 426 WP_041827107.1 CPBP family intramembrane glutamic endopeptidase -
  H1W94_RS08645 (STHERMO_1927) - 1664570..1664767 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  H1W94_RS08650 (STHERMO_1928) - 1665016..1666209 (-) 1194 WP_022096898.1 acetate kinase -
  H1W94_RS08655 (STHERMO_1929) comGH 1666265..1667221 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  H1W94_RS08660 (STHERMO_1930) comGG 1667266..1667583 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG Machinery gene
  H1W94_RS08665 (STHERMO_1931) comGF 1667561..1667998 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  H1W94_RS08670 (STHERMO_1932) comGE 1667982..1668275 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE Machinery gene
  H1W94_RS08675 (STHERMO_1933) comGD 1668247..1668675 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  H1W94_RS08680 (STHERMO_1934) comGC 1668635..1668961 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  H1W94_RS08685 (STHERMO_1935) comGB 1668958..1670058 (-) 1101 WP_148148900.1 competence type IV pilus assembly protein ComGB Machinery gene
  H1W94_RS08690 (STHERMO_1936) comGA/cglA/cilD 1669940..1670881 (-) 942 WP_011226629.1 competence type IV pilus ATPase ComGA Machinery gene
  H1W94_RS08695 (STHERMO_1937) - 1670962..1671324 (-) 363 WP_011226630.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10844.74 Da        Isoelectric Point: 10.4561

>NTDB_id=1011707 H1W94_RS08670 WP_011226625.1 1667982..1668275(-) (comGE) [Streptococcus thermophilus isolate STH_CIRM_1122]
MVNIKRRSLRGYILIESLVAMAVLVLVSSLILEQINTNRRLMADNLHQQEVLSVATMAVQTKQDQLTLNGIAVTVKRSQQ
GITVYESGKEIIHVSKQ

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1011707 H1W94_RS08670 WP_011226625.1 1667982..1668275(-) (comGE) [Streptococcus thermophilus isolate STH_CIRM_1122]
GTGGTAAATATAAAAAGACGATCTCTTAGAGGTTATATTCTTATTGAAAGTCTGGTAGCTATGGCTGTTTTAGTACTTGT
CAGCAGTCTGATATTGGAACAAATTAATACCAACCGCAGACTAATGGCTGATAATCTCCATCAACAAGAGGTCTTGAGTG
TGGCAACAATGGCAGTTCAGACCAAGCAAGACCAGTTAACGCTGAATGGCATAGCGGTGACAGTTAAACGTAGCCAGCAA
GGTATCACGGTTTATGAATCGGGAAAGGAGATTATTCATGTATCTAAGCAGTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M2G2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

43.299

100

0.433
  comGE Streptococcus mutans UA159

43.299

100

0.433
  comGE Lactococcus lactis subsp. cremoris KW2

36.082

100

0.361