Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ABS324_RS11875 Genome accession   NZ_CP158496
Coordinates   2274694..2275473 (+) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus cereus strain NBNZ-2162     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2269694..2280473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABS324_RS11855 (ABS324_11855) trmFO 2270348..2271652 (+) 1305 WP_000213002.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ABS324_RS11860 (ABS324_11860) xerC 2271718..2272617 (+) 900 WP_001101241.1 tyrosine recombinase XerC -
  ABS324_RS11865 (ABS324_11865) hslV 2272660..2273202 (+) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  ABS324_RS11870 (ABS324_11870) hslU 2273225..2274616 (+) 1392 WP_016118541.1 ATP-dependent protease ATPase subunit HslU -
  ABS324_RS11875 (ABS324_11875) codY 2274694..2275473 (+) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ABS324_RS11880 (ABS324_11880) rpsB 2275822..2276523 (+) 702 WP_000111485.1 30S ribosomal protein S2 -
  ABS324_RS11885 (ABS324_11885) tsf 2276627..2277514 (+) 888 WP_001018578.1 translation elongation factor Ts -
  ABS324_RS11890 (ABS324_11890) pyrH 2277581..2278303 (+) 723 WP_000042668.1 UMP kinase -
  ABS324_RS11895 (ABS324_11895) frr 2278306..2278863 (+) 558 WP_000531501.1 ribosome recycling factor -
  ABS324_RS11900 (ABS324_11900) uppS 2278949..2279725 (+) 777 WP_000971296.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=1011614 ABS324_RS11875 WP_000421290.1 2274694..2275473(+) (codY) [Bacillus cereus strain NBNZ-2162]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1011614 ABS324_RS11875 WP_000421290.1 2274694..2275473(+) (codY) [Bacillus cereus strain NBNZ-2162]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGGACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCGAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment