Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   H1W80_RS07515 Genome accession   NZ_LR822040
Coordinates   1444992..1445735 (-) Length   247 a.a.
NCBI ID   WP_180473323.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1125     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1439992..1450735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W80_RS07485 (STHERMO_1672) - 1440263..1441207 (-) 945 WP_180473322.1 TIGR01212 family radical SAM protein -
  H1W80_RS07490 (STHERMO_1673) sepM 1441292..1442368 (-) 1077 WP_022096499.1 SepM family pheromone-processing serine protease Regulator
  H1W80_RS07495 (STHERMO_1674) coaD 1442346..1442843 (-) 498 WP_022096498.1 pantetheine-phosphate adenylyltransferase -
  H1W80_RS07500 (STHERMO_1675) rsmD 1442877..1443476 (-) 600 Protein_1420 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  H1W80_RS07505 (STHERMO_1676) trxB 1443567..1444520 (-) 954 WP_255136104.1 thioredoxin-disulfide reductase -
  H1W80_RS07510 (STHERMO_1677) - 1444553..1444777 (-) 225 WP_087010135.1 DUF4059 family protein -
  H1W80_RS07515 (STHERMO_1678) amiE 1444992..1445735 (-) 744 WP_180473323.1 amino acid ABC transporter ATP-binding protein Regulator
  H1W80_RS07520 (STHERMO_1679) - 1445735..1446658 (-) 924 WP_231906167.1 amino acid ABC transporter permease -
  H1W80_RS07525 (STHERMO_1680) - 1446869..1447699 (-) 831 WP_087010137.1 transporter substrate-binding domain-containing protein -
  H1W80_RS07530 (STHERMO_1682) - 1448198..1448431 (-) 234 WP_002947030.1 hypothetical protein -
  H1W80_RS07535 (STHERMO_1683) dinB 1448729..1449832 (-) 1104 WP_087010138.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27747.89 Da        Isoelectric Point: 5.4757

>NTDB_id=1011585 H1W80_RS07515 WP_180473323.1 1444992..1445735(-) (amiE) [Streptococcus thermophilus isolate STH_CIRM_1125]
MISIKNLTKEFSGQKVLDGIDIDIEKGEVVALVGASGAGKSTILRCLNYLEQPDSGTIAIDDFKVDFETITKEQILTLRR
KLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDEEATKIAKEELAKVGLSNRENYYPRHLSGGQKQRVALARALAMRPDV
LLLDEPTSALDPELVGEVEKSIVDAAKSGQTMILVSHDMNFIYQVADKVLFLEKGHILEQGTPDEIFNHPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=1011585 H1W80_RS07515 WP_180473323.1 1444992..1445735(-) (amiE) [Streptococcus thermophilus isolate STH_CIRM_1125]
ATGATTAGTATCAAAAATTTGACCAAGGAATTTTCAGGACAAAAGGTTCTCGATGGCATTGATATTGACATTGAAAAAGG
TGAAGTTGTGGCTCTTGTTGGTGCCTCTGGTGCAGGGAAGTCGACTATCCTTCGTTGCTTGAACTATTTGGAACAACCTG
ATTCTGGTACTATTGCCATTGATGATTTCAAGGTGGATTTTGAAACAATTACCAAGGAGCAAATCCTTACTCTTCGTCGT
AAGTTGGCCATGGTGTTCCAACAGTTTAACCTCTTTGAACGTCGTACAGCCTTGGATAATGTTAAGGAAGGTCTCAAGAT
TGTTAAGAAACTTTCTGACGAAGAAGCTACCAAGATTGCTAAAGAAGAGCTCGCTAAGGTTGGGCTTTCTAATCGTGAAA
ATTACTACCCACGTCACTTGTCGGGTGGTCAAAAGCAACGTGTGGCTTTGGCTCGTGCCCTTGCAATGAGGCCTGATGTG
CTCTTGCTTGACGAACCAACATCTGCCCTTGACCCTGAGTTGGTTGGTGAGGTTGAAAAATCAATCGTAGATGCGGCTAA
ATCAGGTCAAACCATGATTTTGGTCAGTCACGACATGAACTTTATTTATCAAGTGGCTGACAAGGTGCTTTTCCTTGAAA
AAGGTCATATCCTTGAACAAGGAACACCTGATGAAATCTTTAACCATCCAAAAGAAGAGCGAACAAAAGAATTCTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.962

100

0.364