Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HPOKI102_RS02290 Genome accession   NZ_CP006820
Coordinates   470871..472046 (-) Length   391 a.a.
NCBI ID   WP_025275750.1    Uniprot ID   -
Organism   Helicobacter pylori oki102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 465871..477046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI102_RS02255 (HPOKI102_02375) - 466188..466502 (+) 315 WP_000867999.1 hypothetical protein -
  HPOKI102_RS02260 (HPOKI102_02380) - 466480..467256 (+) 777 WP_000602378.1 RNA polymerase sigma factor FliA -
  HPOKI102_RS02265 (HPOKI102_02385) fliM 467249..468313 (+) 1065 WP_025275746.1 flagellar motor switch protein FliM -
  HPOKI102_RS02270 (HPOKI102_02390) fliY 468317..469180 (+) 864 WP_025275747.1 flagellar motor switch protein FliY -
  HPOKI102_RS02275 (HPOKI102_02395) - 469209..469745 (+) 537 WP_025275748.1 YhcH/YjgK/YiaL family protein -
  HPOKI102_RS02280 (HPOKI102_02400) - 469742..470239 (+) 498 WP_025275749.1 DUF2147 domain-containing protein -
  HPOKI102_RS02285 (HPOKI102_02405) fur 470259..470711 (-) 453 WP_000825001.1 ferric iron uptake transcriptional regulator -
  HPOKI102_RS02290 (HPOKI102_02410) rarA 470871..472046 (-) 1176 WP_025275750.1 replication-associated recombination protein A Machinery gene
  HPOKI102_RS02295 (HPOKI102_02415) - 472043..472414 (-) 372 WP_000332994.1 heat shock protein transcriptional repressor HspR -
  HPOKI102_RS02300 (HPOKI102_02420) - 472424..473290 (-) 867 WP_025275751.1 DnaJ family protein -
  HPOKI102_RS02305 (HPOKI102_02425) - 473458..474708 (+) 1251 WP_025275752.1 hypothetical protein -
  HPOKI102_RS02310 (HPOKI102_02430) - 474803..475639 (-) 837 WP_080276189.1 5'-3' exonuclease -
  HPOKI102_RS02315 (HPOKI102_02440) - 475895..476791 (-) 897 WP_025275754.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43750.39 Da        Isoelectric Point: 7.9831

>NTDB_id=101153 HPOKI102_RS02290 WP_025275750.1 470871..472046(-) (rarA) [Helicobacter pylori oki102]
MSLTSLLNPTSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIACMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCVK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIENPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLASSCLFAVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHNYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=101153 HPOKI102_RS02290 WP_025275750.1 470871..472046(-) (rarA) [Helicobacter pylori oki102]
ATGAGCCTGACTTCGCTTTTAAACCCCACAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGCAAAACAAGCCTGG
CTCAAATCATCGCTTGCATGCTAGAGCGCCCCATTCTTTTATTTAATGCGACGGATTTCAAGCTAGAGGATTTGCGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGTTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCCAAAATAGAAAATCCTATCACTTTAGAAACCCTACAATCCTTACGGCCTCATA
GCCTGAATGACGGATCTTATAGCGATGATACGCATTATAACCTTACTAGCGCGTTAATCAAATCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGTTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCTCTTCTTGCTTGTTTGCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATTATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCGCCTAAATCCAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTTCTGCCTAACGCTAA
AGACTACCTTTACCCGCACAATTATAACGGCTATGTCAAACAAGATTATTTAGAAAAACCCCTAAATCTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAAATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.621

100

0.396

Multiple sequence alignment