Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   H1W87_RS07630 Genome accession   NZ_LR822037
Coordinates   1459116..1459859 (-) Length   247 a.a.
NCBI ID   WP_011226469.1    Uniprot ID   Q5M2Y9
Organism   Streptococcus thermophilus isolate STH_CIRM_1121     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1454116..1464859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W87_RS07600 (STHERMO_1692) - 1454387..1455331 (-) 945 WP_022096500.1 TIGR01212 family radical SAM protein -
  H1W87_RS07605 (STHERMO_1693) sepM 1455416..1456492 (-) 1077 WP_022096499.1 SepM family pheromone-processing serine protease Regulator
  H1W87_RS07610 (STHERMO_1694) coaD 1456470..1456967 (-) 498 WP_180478195.1 pantetheine-phosphate adenylyltransferase -
  H1W87_RS07615 (STHERMO_1695) rsmD 1457001..1457600 (-) 600 Protein_1447 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  H1W87_RS07620 (STHERMO_1696) trxB 1457691..1458644 (-) 954 WP_255136104.1 thioredoxin-disulfide reductase -
  H1W87_RS07625 (STHERMO_1697) - 1458677..1458901 (-) 225 WP_011226468.1 DUF4059 family protein -
  H1W87_RS07630 (STHERMO_1698) amiE 1459116..1459859 (-) 744 WP_011226469.1 amino acid ABC transporter ATP-binding protein Regulator
  H1W87_RS07635 (STHERMO_1699) - 1459859..1460605 (-) 747 WP_095559509.1 amino acid ABC transporter permease -
  H1W87_RS07640 (STHERMO_1700) - 1460994..1461821 (-) 828 WP_180478197.1 transporter substrate-binding domain-containing protein -
  H1W87_RS07645 (STHERMO_1702) - 1462330..1462563 (-) 234 WP_179966779.1 hypothetical protein -
  H1W87_RS07650 (STHERMO_1703) dinB 1462849..1463952 (-) 1104 WP_179966780.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27763.89 Da        Isoelectric Point: 5.4718

>NTDB_id=1011383 H1W87_RS07630 WP_011226469.1 1459116..1459859(-) (amiE) [Streptococcus thermophilus isolate STH_CIRM_1121]
MISIKNLTKEFSGQKVLDGIDIDIEKGEVVALVGASGAGKSTILRCLNYLEQPDSGTIAIDDFKVDFETITKEQILTLRR
KLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDDEATKIAKEELTKVGLSNRENYYPRHLSGGQKQRVALARALAMRPDV
LLLDEPTSALDPELVGEVEKSIVDAAKSGQTMILVSHDMNFIYQVADKVLFLEKGHILEQGTPDEIFNHPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=1011383 H1W87_RS07630 WP_011226469.1 1459116..1459859(-) (amiE) [Streptococcus thermophilus isolate STH_CIRM_1121]
ATGATTAGTATCAAAAATTTGACCAAGGAATTTTCAGGACAAAAGGTTCTCGATGGCATCGATATTGACATTGAAAAAGG
TGAAGTTGTGGCTCTTGTTGGTGCCTCTGGTGCAGGGAAGTCGACTATCCTTCGTTGCTTGAACTATTTGGAACAACCTG
ATTCTGGTACTATTGCCATTGATGATTTCAAGGTGGATTTTGAAACAATTACCAAGGAGCAAATCCTTACTCTTCGTCGT
AAGTTGGCCATGGTGTTCCAACAGTTCAACCTCTTTGAACGTCGTACAGCCTTGGATAATGTTAAGGAAGGTCTCAAGAT
TGTTAAGAAACTTTCTGACGACGAAGCTACCAAGATTGCTAAAGAAGAGCTCACTAAGGTTGGGCTTTCTAATCGTGAAA
ATTACTACCCACGTCACTTGTCGGGTGGTCAAAAGCAACGTGTGGCTTTGGCTCGTGCCCTTGCAATGAGGCCTGATGTG
CTCTTGCTTGACGAACCAACATCTGCCCTTGACCCTGAGTTGGTTGGTGAGGTTGAAAAATCAATCGTAGATGCGGCTAA
ATCAGGTCAAACCATGATTTTGGTCAGTCACGACATGAACTTTATTTATCAAGTGGCTGACAAGGTGCTTTTCCTTGAAA
AAGGTCATATCCTTGAACAAGGAACACCTGATGAAATCTTTAACCATCCAAAAGAAGAGCGAACAAAAGAATTCTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M2Y9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.962

100

0.364