Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   H1X38_RS02705 Genome accession   NZ_LR822035
Coordinates   512067..513803 (+) Length   578 a.a.
NCBI ID   WP_011225637.1    Uniprot ID   Q5M5F0
Organism   Streptococcus thermophilus isolate STH_CIRM_1051     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 507067..518803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X38_RS09875 (STHERMO_0566) - 507407..507640 (+) 234 WP_014621266.1 ABC transporter permease -
  H1X38_RS09880 (STHERMO_0567) - 507753..508043 (+) 291 WP_014727364.1 ABC transporter permease -
  H1X38_RS09885 (STHERMO_0568) - 508040..508255 (+) 216 WP_041827315.1 ABC transporter permease -
  H1X38_RS02690 (STHERMO_0569) rplJ 508546..509049 (+) 504 WP_011225635.1 50S ribosomal protein L10 -
  H1X38_RS02695 (STHERMO_0570) rplL 509124..509492 (+) 369 WP_011225636.1 50S ribosomal protein L7/L12 -
  H1X38_RS02700 (STHERMO_0571) - 509867..511042 (-) 1176 WP_014608082.1 IS256-like element IS1191 family transposase -
  H1X38_RS02705 (STHERMO_0572) rcrP 512067..513803 (+) 1737 WP_011225637.1 ABC transporter ATP-binding protein Regulator
  H1X38_RS02710 (STHERMO_0573) rcrQ 513816..515603 (+) 1788 WP_014608084.1 ABC transporter ATP-binding protein Regulator
  H1X38_RS02715 (STHERMO_0574) queA 515701..516744 (-) 1044 WP_011680873.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  H1X38_RS02720 (STHERMO_0575) - 516894..517595 (+) 702 WP_014608085.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64689.59 Da        Isoelectric Point: 5.7785

>NTDB_id=1011132 H1X38_RS02705 WP_011225637.1 512067..513803(+) (rcrP) [Streptococcus thermophilus isolate STH_CIRM_1051]
MSYIWSYLRRYPKWLAMNFTAAILFVIANLGMPTVLARMIDEGINRGDADKLYTYAWVMFGVVLTGIVGRVLLAYAVGKL
TTTMVQVMRNDIYAKLQEYSHHEYEQIGVSSLVTRITSDAFVLMQFADQVLKVGVITPLMMVSSVFLILTTSPSLAWIVA
ISLPLLAVVVWYVAVKTRPLSEKQQATLDKINQYARENLTGLRVIRAFAREDFQEKKFASENAVYADNSSKLFKLTGLTE
PLFVQIIIAMIVAIVWFALNPLGSGTLAIGDLVAFIEYSFHALLSFLFLANLFTMYPRTAVSSERLQEIMDMPISINPNE
DGVTETDTKGYLEFDNVTFAYPGETESPVLHNISFKAKAGETIAFIGSTGSGKSSLVQLIPRFYDVTLGRILVDGVDVRD
YNLKALRRKIGFIPQKALLFTGTIGENIRYGKENASHEELNQATDVAQAKEFIESKEERYDSHLAEGGSNLSGGQKQRLS
IARAVVKRPDLYIFDDSFSALDYKTDATLRRRLKEVTQDATVLIVAQRVGTIMDADQIIVLDKGEIVGRGRHEELMESNE
IYREIANSQLNQKSLTED

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=1011132 H1X38_RS02705 WP_011225637.1 512067..513803(+) (rcrP) [Streptococcus thermophilus isolate STH_CIRM_1051]
ATGTCTTATATTTGGTCTTATCTCAGGCGTTATCCTAAGTGGCTAGCGATGAATTTTACGGCAGCCATTTTATTTGTTAT
TGCTAACCTGGGTATGCCGACGGTTCTTGCTAGAATGATTGATGAGGGAATTAACCGTGGGGATGCTGACAAGCTTTATA
CCTATGCTTGGGTCATGTTTGGTGTGGTCTTAACTGGTATTGTTGGTCGTGTGCTTTTGGCCTATGCGGTTGGTAAGTTG
ACGACTACTATGGTGCAGGTCATGCGTAATGATATCTACGCCAAACTTCAGGAGTATTCACACCATGAGTACGAACAAAT
TGGGGTATCTTCTTTGGTGACTCGTATCACGTCGGATGCTTTTGTTCTCATGCAGTTTGCAGATCAAGTCCTCAAGGTGG
GTGTTATCACTCCTTTGATGATGGTTTCCAGTGTCTTTTTGATTTTGACGACAAGTCCATCTTTGGCTTGGATTGTGGCA
ATCTCCTTGCCTTTACTAGCTGTAGTTGTCTGGTATGTGGCGGTAAAAACGCGTCCGCTTTCTGAAAAGCAACAGGCAAC
TCTCGACAAGATTAACCAGTATGCTCGTGAAAATCTGACTGGACTTCGTGTCATCCGTGCTTTCGCTAGAGAAGATTTCC
AAGAGAAGAAGTTTGCCTCTGAAAATGCTGTCTATGCGGATAATTCAAGCAAGCTCTTTAAATTGACTGGTTTAACAGAG
CCACTTTTTGTACAAATCATCATCGCTATGATTGTGGCTATTGTTTGGTTTGCCCTAAATCCATTAGGTTCTGGAACTCT
GGCAATCGGGGACTTGGTTGCCTTCATTGAGTACAGTTTCCATGCACTATTATCCTTCCTCTTTCTAGCTAATCTCTTTA
CTATGTATCCTCGTACAGCGGTATCTAGTGAACGTCTGCAGGAAATTATGGATATGCCTATTTCTATCAACCCAAATGAA
GATGGGGTGACAGAGACTGATACTAAGGGATATTTGGAATTTGATAATGTGACCTTTGCCTATCCTGGTGAAACTGAGAG
TCCTGTTCTACACAATATTTCTTTTAAGGCTAAGGCAGGTGAAACTATTGCCTTTATTGGGTCTACGGGCTCAGGAAAAT
CGTCACTTGTACAGTTGATTCCACGCTTTTATGATGTCACACTTGGACGTATTCTTGTGGATGGTGTGGATGTACGTGAC
TACAATCTTAAGGCTCTTCGTCGTAAGATTGGCTTTATTCCACAAAAAGCTCTACTCTTTACTGGAACTATCGGTGAAAA
TATCCGTTATGGTAAGGAAAATGCTAGTCATGAAGAATTGAATCAAGCTACGGACGTGGCTCAGGCTAAGGAATTTATTG
AAAGCAAGGAAGAACGCTATGATTCTCACTTGGCTGAGGGTGGTAGCAACCTTTCTGGGGGACAGAAGCAGCGTTTGTCA
ATTGCACGTGCGGTGGTTAAACGTCCTGATCTCTATATCTTTGATGATTCCTTCTCTGCCTTGGACTACAAGACTGATGC
GACCTTGCGCCGTCGTCTAAAAGAAGTGACTCAGGATGCGACGGTCTTGATCGTGGCTCAACGTGTGGGAACCATTATGG
ATGCAGATCAGATTATCGTTCTTGATAAGGGTGAAATTGTTGGTCGTGGCCGTCACGAAGAGCTCATGGAAAGTAATGAG
ATTTACCGTGAGATTGCTAATTCACAATTGAATCAAAAGAGTCTTACAGAAGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(17-279)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M5F0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.189

91.696

0.369

Multiple sequence alignment