Detailed information NTG1011069

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: H1X13_RS07855
• Genome accession: NZ_LR822034
• Coordinates: 1520593..1521378 (-)
• Length: 261 a.a.
• NCBI ID: WP_002951720.1
• Uniprot ID: Q5M305
• Organism: Streptococcus thermophilus isolate STH_CIRM_1049
• Function: repress the expression of comX (predicted from homology) Competence regulation

Genomic Context

Location: 1515593..1526378

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1X13_RS07820 (STHERMO_1742)	gatC	1515660..1515962 (-)	303	WP_002884769.1	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	-
H1X13_RS07825 (STHERMO_1743)	-	1516102..1516356 (-)	255	WP_180481089.1	glycosyltransferase	-
H1X13_RS07830 (STHERMO_1744)	-	1516369..1516578 (-)	210	WP_180481090.1	glycosyltransferase	-
H1X13_RS07835 (STHERMO_1745)	-	1516894..1518334 (-)	1441	Protein_1510	6-phospho-beta-glucosidase	-
H1X13_RS07840 (STHERMO_1747)	msrA	1518487..1518996 (-)	510	WP_002951714.1	peptide-methionine (S)-S-oxide reductase MsrA	-
H1X13_RS07845 (STHERMO_1748)	-	1519008..1519856 (-)	849	WP_041828318.1	MetQ/NlpA family ABC transporter substrate-binding protein	-
H1X13_RS07850 (STHERMO_1749)	-	1519979..1520530 (-)	552	WP_002946999.1	cysteine hydrolase family protein	-
H1X13_RS07855 (STHERMO_1750)	codY	1520593..1521378 (-)	786	WP_002951720.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
H1X13_RS07860 (STHERMO_1751)	-	1521638..1522852 (-)	1215	WP_002951721.1	pyridoxal phosphate-dependent aminotransferase	-
H1X13_RS07865 (STHERMO_1752)	-	1523207..1523659 (+)	453	WP_002946987.1	universal stress protein	-
H1X13_RS07870	-	1523836..1524410 (+)	575	Protein_1517	IS30 family transposase	-
H1X13_RS10140 (STHERMO_1755)	-	1524482..1525090 (-)	609	WP_002946982.1	hypothetical protein	-
H1X13_RS07880 (STHERMO_1757)	pflA	1525302..1526102 (-)	801	WP_002946980.1	pyruvate formate-lyase-activating protein	-

Sequence

Protein

• Length: 261 a.a.
• Molecular weight: 28919.13 Da
• Isoelectric Point: 4.5802

>NTDB_id=1011069 H1X13_RS07855 WP_002951720.1 1520593..1521378(-) (codY) [Streptococcus thermophilus isolate STH_CIRM_1049]
MANLLDKTRKITSILQRSVDSLEGDLPYNNMAAQLADIIDCNAAIVNGGGALLGFAMKYKTNNDRVEKFFKAKQLPEEYI
RGISRVYDTQENIGIDSDLTIFPVELKDDFPDGLTTIAPIYGGGMRLGSFIIWRNDHDFVDDDLILVEIASTVVGLQLLH
LQTENLEETIRKQTAINMAINTLSYSEIKAVSAILNELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLNEGIYDKLKEYE

Nucleotide

• Length: 786 bp

>NTDB_id=1011069 H1X13_RS07855 WP_002951720.1 1520593..1521378(-) (codY) [Streptococcus thermophilus isolate STH_CIRM_1049]
ATGGCAAATTTGCTTGATAAAACACGTAAAATTACTTCTATCTTGCAACGCTCAGTAGATAGTTTGGAAGGAGATCTTCC
ATACAACAACATGGCTGCTCAGTTGGCAGATATTATTGATTGTAATGCTGCTATTGTAAATGGTGGAGGTGCTCTCCTTG
GTTTTGCTATGAAATACAAAACCAACAATGACCGTGTGGAAAAGTTTTTTAAAGCTAAACAACTTCCAGAGGAATACATA
CGTGGTATCAGCCGTGTTTATGATACTCAAGAAAATATCGGTATTGACAGTGACTTGACCATCTTCCCAGTGGAATTAAA
AGATGATTTCCCTGACGGTTTGACTACAATTGCACCAATCTATGGTGGTGGTATGCGTCTTGGTTCTTTCATTATTTGGC
GTAACGACCATGATTTTGTGGACGACGACCTTATCTTGGTTGAGATTGCATCTACAGTAGTTGGTTTGCAATTGTTGCAT
CTTCAAACAGAAAACTTGGAAGAAACGATTCGTAAACAAACAGCTATTAATATGGCTATTAATACCTTGTCTTACTCAGA
AATCAAGGCAGTTTCAGCTATCTTGAATGAGTTGGACGGTTTAGAAGGTCGTTTGACAGCCTCTGTTATCGCGGACCGTA
TCGGAATTACTCGTTCTGTTATTGTTAATGCTCTTCGTAAATTAGAATCAGCTGGTATTATTGAAAGTCGTTCGCTTGGT
ATGAAAGGTACTTACCTTAAAGTCCTTAACGAAGGTATCTACGACAAATTGAAAGAATACGAATAA

Domains

Predicted by InterProScan.

• CodY GAF-like domain (CodY) (3-182)

• CodY helix-turn-helix domain (HTH_CodY) (201-261)

3D structure

• AlphaFold DB: Q5M305

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Lactococcus lactis subsp. lactis strain DGCC12653	64.591	98.467	0.636
codY	Bacillus subtilis subsp. subtilis str. 168	53.036	94.636	0.502