Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   LLUC023_RS10830 Genome accession   NZ_CP158368
Coordinates   2121775..2122713 (-) Length   312 a.a.
NCBI ID   WP_011677085.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UC023     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2116775..2127713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC023_RS10805 (LLUC023_10810) frr 2116953..2117510 (-) 558 WP_011677081.1 ribosome recycling factor -
  LLUC023_RS10810 (LLUC023_10815) pyrH 2117666..2118382 (-) 717 WP_004254608.1 UMP kinase -
  LLUC023_RS10815 (LLUC023_10820) - 2118467..2118919 (-) 453 WP_011677082.1 hypothetical protein -
  LLUC023_RS10820 (LLUC023_10825) - 2119049..2120237 (-) 1189 Protein_2105 acetate kinase -
  LLUC023_RS10825 (LLUC023_10830) - 2120396..2121583 (-) 1188 WP_011677084.1 acetate kinase -
  LLUC023_RS10830 (LLUC023_10835) comYH 2121775..2122713 (-) 939 WP_011677085.1 class I SAM-dependent methyltransferase Machinery gene
  LLUC023_RS10835 (LLUC023_10840) - 2122801..2123052 (-) 252 WP_011677086.1 DUF3165 family protein -
  LLUC023_RS10840 (LLUC023_10845) typA 2123153..2124985 (-) 1833 WP_031286284.1 translational GTPase TypA -
  LLUC023_RS10850 (LLUC023_10855) - 2126437..2126862 (-) 426 WP_021212031.1 hypothetical protein -
  LLUC023_RS10855 (LLUC023_10860) - 2126777..2127034 (-) 258 WP_259750987.1 hypothetical protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34694.69 Da        Isoelectric Point: 4.3603

>NTDB_id=1011023 LLUC023_RS10830 WP_011677085.1 2121775..2122713(-) (comYH) [Lactococcus cremoris strain UC023]
MNMEKVAQGFELVVENITKLSEKLDTDFYDAFVEQNAAFLDGTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQANHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
YAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVAATDGHTFAHHLLIEQSFNYLKDGAFAVFLAPEDLLTSV
QGPLLKEWISQHGSIMAVITLPSSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEIFMEEFTKTVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=1011023 LLUC023_RS10830 WP_011677085.1 2121775..2122713(-) (comYH) [Lactococcus cremoris strain UC023]
ATGAACATGGAAAAAGTGGCTCAAGGTTTTGAGCTGGTAGTTGAAAATATTACAAAATTATCTGAGAAATTAGATACAGA
TTTTTATGATGCTTTTGTGGAACAAAATGCTGCTTTTTTAGATGGTACTGACCAAGGAATTGTTGAGCTGTCAGTAAATA
ATGACAAACTCCGTCAGTTAAATTTATCAAATAAAGAATGGCAAAAACTTTTTCAATTTGTTTTATTAAAAGGTTCGCAA
GTTGCGCCTCTTCAGGCAAATCATGCCATGACTCCTGATGCAATTGGTCTAATTTTCAACTTTATCATTGAACATCTCAA
TAAAAATTCTGAACTTCGATTAATTGAGTTTGGTTCTGGTATGGGTAATCTTGCGGAAACATTGCTTGTTAATCTTAATA
AAAAAGTAGATTATGTTGGTTTTGAAGTCGATGATTTACTTTTAGATTTGTCAGCTTCAATGGCTGAAATCATGGGAAGC
TATGCCGAATTTATGCAAATTGATGCGGTTCAAAAACGGTTGATGGAGCCAGCTGATGTTGTTGTTAGTGATTTGCCAAT
CGGTTTTTATCCAGATGATGAAGTTGCGAAAAATTTTGAAGTCGCTGCTACTGATGGACACACCTTTGCACATCATTTGT
TGATTGAACAATCATTTAATTACTTGAAAGATGGTGCTTTTGCAGTTTTCTTAGCACCGGAGGATTTACTGACAAGTGTA
CAAGGCCCACTTTTAAAAGAATGGATTAGTCAGCATGGAAGTATTATGGCGGTAATTACTTTACCAAGCTCACTTTTTAA
TGCTGATGCTAAAGCAATTTATGTCTTGAAAAAAGGGCCTGCTGCTCATGCGACCTTTGCTCATCCTTTGTCATCATTGA
CAGACAGAGAAAGTTTAGAAATCTTTATGGAAGAATTTACAAAAACTGTAAAGTTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

49.201

100

0.494
  comYH Streptococcus mutans UA159

48.882

100

0.49

Multiple sequence alignment