Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LLUC023_RS00840 Genome accession   NZ_CP158368
Coordinates   157906..158694 (+) Length   262 a.a.
NCBI ID   WP_396420022.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UC023     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 152906..163694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC023_RS00815 (LLUC023_00820) - 153267..154157 (+) 891 WP_205288230.1 IS982-like element IS982B family transposase -
  LLUC023_RS00820 (LLUC023_00825) - 154231..154440 (+) 210 WP_010905160.1 hypothetical protein -
  LLUC023_RS00825 (LLUC023_00830) - 154452..154691 (+) 240 WP_010905161.1 hypothetical protein -
  LLUC023_RS00830 (LLUC023_00835) - 154888..156471 (+) 1584 WP_259750797.1 glycosyltransferase -
  LLUC023_RS00835 (LLUC023_00840) - 156539..157753 (+) 1215 WP_003129721.1 pyridoxal phosphate-dependent aminotransferase -
  LLUC023_RS00840 (LLUC023_00845) codY 157906..158694 (+) 789 WP_396420022.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LLUC023_RS00845 (LLUC023_00850) gatC 159534..159839 (+) 306 WP_010905163.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  LLUC023_RS00850 (LLUC023_00855) gatA 159839..161305 (+) 1467 WP_021210934.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  LLUC023_RS00855 (LLUC023_00860) gatB 161305..162738 (+) 1434 WP_003129725.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29220.51 Da        Isoelectric Point: 4.4768

>NTDB_id=1010993 LLUC023_RS00840 WP_396420022.1 157906..158694(+) (codY) [Lactococcus cremoris strain UC023]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDRPLAIFPEESLDDFPKGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLVLVEFATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=1010993 LLUC023_RS00840 WP_396420022.1 157906..158694(+) (codY) [Lactococcus cremoris strain UC023]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATATAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAATGCATGTGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTATAATACAAACAATGACCGTGTTGACCAATTTTTCTATGATCGTAAATTGCCTGATGAATATGTT
CGTGCGGCAGTACGTATCTACGATACAATGGCAAACGTTCCTGTTGACCGTCCATTAGCAATTTTCCCAGAAGAAAGTCT
TGACGATTTTCCAAAAGGTGTGACAACTTTAGCACCTATTTATGGTTCTGGAATGCGTTTGGGAACATTTATCATGTGGC
GTGAAGACGGCGAATTCACTGATGATGATTTGGTCTTAGTTGAATTTGCAACAACAGTAATTGGTGTTCAACTCTCAAAT
CTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACCATGGCAACTATGGCTGTTAACACACTTTCATATTCAGA
AATGAAAGCTGTTAAAGCAATCATTGAAGAGCTTGATGGTGAAGAAGGGCATGTTATCGCTTCTGTCATTGCTGACAAGA
TTGGGATTACACGTTCAGTCATCGTTAACGCTTTGCGTAAACTCGAATCTGCTGGTGTAATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTATTTGATAAACTTGCAGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

99.237

100

0.992
  codY Bacillus subtilis subsp. subtilis str. 168

47.843

97.328

0.466

Multiple sequence alignment