Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   H1W90_RS07945 Genome accession   NZ_LR822033
Coordinates   1537553..1538296 (-) Length   247 a.a.
NCBI ID   WP_011226469.1    Uniprot ID   Q5M2Y9
Organism   Streptococcus thermophilus isolate STH_CIRM_1048     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1532553..1543296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W90_RS07915 (STHERMO_1764) - 1532824..1533768 (-) 945 WP_022096500.1 TIGR01212 family radical SAM protein -
  H1W90_RS07920 (STHERMO_1765) sepM 1533853..1534929 (-) 1077 WP_022096499.1 SepM family pheromone-processing serine protease Regulator
  H1W90_RS07925 (STHERMO_1766) coaD 1534907..1535404 (-) 498 WP_011226465.1 pantetheine-phosphate adenylyltransferase -
  H1W90_RS07930 (STHERMO_1767) rsmD 1535438..1536037 (-) 600 Protein_1533 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  H1W90_RS07935 (STHERMO_1768) trxB 1536128..1537081 (-) 954 WP_255136104.1 thioredoxin-disulfide reductase -
  H1W90_RS07940 (STHERMO_1769) - 1537114..1537338 (-) 225 WP_002951743.1 DUF4059 family protein -
  H1W90_RS07945 (STHERMO_1770) amiE 1537553..1538296 (-) 744 WP_011226469.1 amino acid ABC transporter ATP-binding protein Regulator
  H1W90_RS07950 (STHERMO_1771) - 1538296..1539042 (-) 747 WP_180481337.1 amino acid ABC transporter permease -
  H1W90_RS07955 (STHERMO_1772) - 1539439..1540269 (-) 831 WP_041828322.1 transporter substrate-binding domain-containing protein -
  H1W90_RS07960 (STHERMO_1774) - 1540739..1541005 (-) 267 WP_224112096.1 hypothetical protein -
  H1W90_RS07965 (STHERMO_1775) dinB 1541282..1542385 (-) 1104 WP_164178282.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27763.89 Da        Isoelectric Point: 5.4718

>NTDB_id=1010961 H1W90_RS07945 WP_011226469.1 1537553..1538296(-) (amiE) [Streptococcus thermophilus isolate STH_CIRM_1048]
MISIKNLTKEFSGQKVLDGIDIDIEKGEVVALVGASGAGKSTILRCLNYLEQPDSGTIAIDDFKVDFETITKEQILTLRR
KLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDDEATKIAKEELTKVGLSNRENYYPRHLSGGQKQRVALARALAMRPDV
LLLDEPTSALDPELVGEVEKSIVDAAKSGQTMILVSHDMNFIYQVADKVLFLEKGHILEQGTPDEIFNHPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=1010961 H1W90_RS07945 WP_011226469.1 1537553..1538296(-) (amiE) [Streptococcus thermophilus isolate STH_CIRM_1048]
ATGATTAGTATCAAAAATTTGACCAAGGAATTTTCAGGACAAAAGGTTCTCGATGGCATCGATATTGACATTGAAAAAGG
TGAAGTTGTGGCTCTTGTTGGTGCCTCTGGTGCAGGGAAGTCGACTATCCTTCGTTGCTTGAACTATTTGGAACAACCTG
ATTCTGGTACTATTGCCATTGATGATTTCAAGGTGGATTTTGAAACAATTACCAAGGAGCAAATCCTTACTCTTCGTCGT
AAGTTGGCCATGGTGTTCCAACAGTTCAACCTCTTTGAACGTCGTACAGCCTTGGATAATGTTAAGGAAGGTCTCAAGAT
TGTTAAGAAACTTTCTGACGACGAAGCTACCAAGATTGCTAAAGAAGAGCTCACTAAGGTTGGGCTTTCTAATCGTGAAA
ATTACTACCCACGTCACTTGTCGGGTGGTCAAAAGCAACGTGTGGCTTTGGCTCGTGCCCTTGCAATGAGGCCTGATGTG
CTCTTGCTTGACGAACCAACATCTGCCCTTGACCCTGAGTTGGTTGGTGAGGTTGAAAAATCAATCGTAGATGCGGCTAA
ATCAGGTCAAACCATGATTTTGGTCAGTCACGACATGAACTTTATTTATCAAGTGGCTGACAAGGTGCTTTTCCTTGAAA
AAGGTCATATCCTTGAACAAGGAACACCTGATGAAATCTTTAACCATCCAAAAGAAGAGCGAACAAAAGAATTCTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M2Y9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.962

100

0.364