Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   H1W90_RS02665 Genome accession   NZ_LR822033
Coordinates   509615..511402 (+) Length   595 a.a.
NCBI ID   WP_180481230.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1048     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 504615..516402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W90_RS09885 (STHERMO_0574) - 504656..504898 (+) 243 WP_224103592.1 ABC transporter permease -
  H1W90_RS10275 (STHERMO_0575) - 504915..505163 (+) 249 WP_242683756.1 ABC transporter permease -
  H1W90_RS10280 (STHERMO_0576) - 505160..505375 (+) 216 WP_269149684.1 ABC transporter permease -
  H1W90_RS02650 (STHERMO_0577) rplJ 505667..506170 (+) 504 WP_011225635.1 50S ribosomal protein L10 -
  H1W90_RS02655 (STHERMO_0578) rplL 506245..506613 (+) 369 WP_011225636.1 50S ribosomal protein L7/L12 -
  H1W90_RS02660 (STHERMO_0580) rcrP 507866..509602 (+) 1737 WP_180481229.1 ABC transporter ATP-binding protein Regulator
  H1W90_RS02665 (STHERMO_0581) rcrQ 509615..511402 (+) 1788 WP_180481230.1 ABC transporter ATP-binding protein Regulator
  H1W90_RS02670 (STHERMO_0582) queA 511500..512543 (-) 1044 WP_011225639.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  H1W90_RS02675 (STHERMO_0583) - 512693..513394 (+) 702 WP_041826983.1 glucosamine-6-phosphate deaminase -
  H1W90_RS02680 (STHERMO_0584) - 513560..514855 (-) 1296 WP_011680875.1 GHKL domain-containing protein -
  H1W90_RS02685 (STHERMO_0585) - 514855..515565 (-) 711 WP_004197213.1 LytR/AlgR family response regulator transcription factor -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 66541.74 Da        Isoelectric Point: 5.2545

>NTDB_id=1010915 H1W90_RS02665 WP_180481230.1 509615..511402(+) (rcrQ) [Streptococcus thermophilus isolate STH_CIRM_1048]
MKDNKKKTTHSSSFGRLWSYLQVYRFPLYLAIFLKIISVIMSVIEPVVIGLAITELTKNTLDIIKGVAGAHINVSYVGLV
LVFYLLRGLIYELASYYSNYFMTNAVQATVQDMRNEMIEKINRTSVSYFDKKQFGDLLGRFTSDVETVSNALQQSFLQVV
NAIFTLALVIGTVLYLNLQLGAVVVITIPISYFGARFIMSKSQPYFKQQADALGTLNGFVQENLTGFNVIKLFGREGRSL
DDFKEITEDLQKVGFKANFISGLMMPFLNGLSDLTYLIIAVLGGLQVLAGRLTIGNMQAFVQYVWQINQPIQNLTQLAGQ
LQSAKSSLDRIFQLMDEPDEANDATEVLEGDLTGQVIFNHVDFQYVADKPLIRDFNLEVNPGEMVAIVGPTGAGKSTIIN
LLMRFYDVTAGSISVDGHDIRNLSRKDYRKQFGMVLQDAWLFEGTIKENLRFGNLEATDEEIVEAAKAANVDHFIRTLPG
GYNMEINQESSNISLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMKTLMQGRTSFVIAHRLSTIQEADKI
LVLKDGQIIEQGNHESLLADKGFYYDLYNSQFAEK

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=1010915 H1W90_RS02665 WP_180481230.1 509615..511402(+) (rcrQ) [Streptococcus thermophilus isolate STH_CIRM_1048]
ATGAAGGATAATAAAAAGAAAACAACTCATTCCTCAAGTTTTGGCCGCCTTTGGTCATACTTGCAGGTTTATCGTTTCCC
ACTTTACTTAGCTATTTTCCTGAAAATTATTAGTGTCATCATGAGTGTTATTGAGCCGGTGGTCATTGGTTTAGCCATTA
CGGAACTGACTAAAAACACACTGGACATCATTAAGGGGGTAGCAGGTGCTCATATCAACGTGTCCTACGTTGGTTTAGTT
TTGGTCTTTTACCTCTTGCGTGGTCTCATCTATGAGTTGGCTTCTTACTATTCCAACTATTTTATGACCAATGCCGTGCA
AGCAACGGTTCAGGATATGCGAAATGAGATGATTGAGAAAATCAATCGTACCTCAGTGTCATACTTTGATAAGAAACAAT
TTGGAGACCTTTTGGGTCGCTTTACTAGTGACGTCGAGACAGTTTCAAATGCCTTGCAGCAGTCATTCTTGCAGGTTGTC
AACGCCATCTTTACTCTAGCCTTGGTTATTGGGACAGTGCTTTACCTTAATCTTCAGTTGGGAGCTGTGGTTGTTATCAC
TATTCCGATTTCTTACTTTGGTGCTCGCTTCATTATGAGTAAGTCTCAACCTTACTTTAAGCAGCAGGCTGATGCCCTAG
GTACTCTTAACGGTTTTGTTCAGGAAAATCTGACTGGTTTCAATGTGATTAAACTTTTTGGACGTGAGGGTAGATCTTTA
GACGACTTTAAAGAAATTACGGAAGATCTTCAAAAGGTAGGTTTTAAGGCCAATTTCATTTCAGGCCTCATGATGCCTTT
CCTTAATGGTTTATCTGACTTGACCTATCTAATTATTGCCGTCCTAGGTGGTTTGCAAGTCTTGGCTGGTCGCTTGACGA
TTGGTAATATGCAGGCTTTCGTTCAGTACGTTTGGCAGATTAATCAACCTATTCAGAACTTGACTCAGTTGGCTGGACAA
TTGCAGAGTGCTAAATCTTCCTTGGACCGTATTTTCCAACTGATGGATGAACCAGACGAGGCTAATGATGCTACTGAGGT
GCTTGAAGGAGATTTAACTGGTCAAGTTATCTTTAATCATGTGGACTTCCAGTATGTAGCTGATAAACCTTTGATTCGTG
ACTTTAATCTTGAGGTTAATCCTGGTGAAATGGTGGCTATTGTCGGTCCTACCGGTGCTGGAAAATCAACTATTATCAAT
CTTCTCATGCGTTTCTATGATGTTACTGCAGGTTCTATCTCGGTTGATGGTCATGATATACGCAACTTGTCGCGTAAAGA
TTATCGTAAACAGTTTGGTATGGTGCTTCAGGATGCTTGGCTCTTTGAAGGAACTATCAAGGAAAATCTTCGTTTTGGTA
ATCTTGAGGCAACTGATGAAGAAATTGTTGAAGCAGCGAAGGCTGCCAATGTGGATCACTTTATCCGTACGCTGCCTGGT
GGCTACAACATGGAAATAAACCAGGAATCAAGTAACATTTCACTGGGACAAAAGCAACTTTTGACCATAGCCCGTGCACT
TTTGGCTGACCCTAAAATCTTGATTTTGGACGAGGCAACCTCATCAGTTGATACCCGTCTGGAACTCTTGATTCAAAAAG
CCATGAAGACACTTATGCAAGGTCGAACAAGTTTTGTCATCGCTCACCGTTTATCAACAATCCAAGAAGCAGACAAGATT
TTGGTCCTTAAAGATGGACAAATCATCGAACAAGGGAACCATGAATCCCTCCTTGCAGATAAAGGTTTCTATTACGATTT
GTATAATAGTCAATTTGCAGAGAAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(373-521)

ABC transporter transmembrane region (ABC_membrane)

(29-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.689

100

0.427