Detailed information NTG1010874

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: H1W91_RS09325
• Genome accession: NZ_LR822032
• Coordinates: 1785566..1786834 (-)
• Length: 422 a.a.
• NCBI ID: WP_002952183.1
• Uniprot ID: Q5M295
• Organism: Streptococcus thermophilus isolate STH_CIRM_1050
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1780566..1791834

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1W91_RS09300 (STHERMO_2064)	-	1781647..1783188 (+)	1542	WP_014622049.1	ATP-binding cassette domain-containing protein	-
H1W91_RS09305 (STHERMO_2065)	-	1783592..1784104 (-)	513	WP_014608793.1	helix-turn-helix domain-containing protein	-
H1W91_RS09310 (STHERMO_2067)	-	1784420..1785124 (+)	705	Protein_1774	site-specific integrase	-
H1W91_RS09325 (STHERMO_2068)	rarA	1785566..1786834 (-)	1269	WP_002952183.1	replication-associated recombination protein A	Machinery gene
H1W91_RS09330 (STHERMO_2069)	rpmB	1787005..1787193 (+)	189	WP_002952184.1	50S ribosomal protein L28	-
H1W91_RS09335 (STHERMO_2070)	-	1787320..1787586 (+)	267	WP_002952186.1	IreB family regulatory phosphoprotein	-
H1W91_RS09340 (STHERMO_2071)	ruvX	1787586..1788005 (+)	420	WP_011681732.1	Holliday junction resolvase RuvX	-
H1W91_RS09345 (STHERMO_2072)	-	1788114..1788419 (+)	306	WP_002952188.1	DUF1292 domain-containing protein	-
H1W91_RS09350 (STHERMO_2073)	-	1788632..1790278 (+)	1647	WP_180477191.1	hypothetical protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46419.92 Da
• Isoelectric Point: 6.8977

>NTDB_id=1010874 H1W91_RS09325 WP_002952183.1 1785566..1786834(-) (rarA) [Streptococcus thermophilus isolate STH_CIRM_1050]
MPDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLGDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDIVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAALADLRKSGNLPIPRHLRDGHYAGSKALGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide

• Length: 1269 bp

>NTDB_id=1010874 H1W91_RS09325 WP_002952183.1 1785566..1786834(-) (rarA) [Streptococcus thermophilus isolate STH_CIRM_1050]
ATGCCAGATAATCTTGCTTTACGCATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAGCATTTAGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGATAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTCTAGATGAGATCCATCGTTTGGATAAAGCGAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCGTTTTTTTCTG
TAACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTAGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGGGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATCGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGGCAGC
ATCATATTACCTTAGACATAGTGGAAAATAGCTTACAACGCAGTTATATTACTATGGATAAAGACGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTGATGTTAATGCCAGTCTTCACTATGCGGCACGTTTGGTTGA
GGCAGGGGATTTGCCTAGTCTAGCACGTCGCTTGACTGTGATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGCCCTGGCGGATCTTAGAAAGTCTGG
GAATTTACCTATTCCGCGTCATCTGAGAGATGGACACTATGCTGGAAGTAAGGCACTGGGTAATGCACAAGATTATAAGT
ATCCCCATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCAGATAAATTAAGAGGAGTCAATTATTTCCAACCT
AATGAAACTGGGAAATACGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (173-251)

• ATPase family associated with various cellular activities (AAA) (AAA) (42-144)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-415)

3D structure

• AlphaFold DB: Q5M295

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	59.666	99.289	0.592