Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   H1W74_RS02665 Genome accession   NZ_LR822031
Coordinates   503080..504816 (+) Length   578 a.a.
NCBI ID   WP_011225637.1    Uniprot ID   Q5M5F0
Organism   Streptococcus thermophilus isolate STH_CIRM_1047     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 498080..509816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W74_RS09595 (STHERMO_0571) - 498490..498627 (+) 138 WP_172838673.1 hypothetical protein -
  H1W74_RS09600 (STHERMO_0573) - 498807..499058 (+) 252 WP_002947285.1 hypothetical protein -
  H1W74_RS09605 (STHERMO_0574) - 499298..499543 (+) 246 WP_002947287.1 hypothetical protein -
  H1W74_RS09610 (STHERMO_0575) - 499605..499859 (+) 255 WP_002947289.1 ABC transporter permease -
  H1W74_RS02645 (STHERMO_0576) - 499945..500367 (+) 423 WP_022096947.1 ABC transporter permease -
  H1W74_RS02650 (STHERMO_0577) - 500364..500591 (+) 228 WP_232089295.1 ABC transporter permease -
  H1W74_RS02655 (STHERMO_0578) rplJ 500882..501385 (+) 504 WP_011225635.1 50S ribosomal protein L10 -
  H1W74_RS02660 (STHERMO_0579) rplL 501460..501828 (+) 369 WP_011225636.1 50S ribosomal protein L7/L12 -
  H1W74_RS02665 (STHERMO_0581) rcrP 503080..504816 (+) 1737 WP_011225637.1 ABC transporter ATP-binding protein Regulator
  H1W74_RS02670 (STHERMO_0582) rcrQ 504829..506616 (+) 1788 WP_011225638.1 ABC transporter ATP-binding protein Regulator
  H1W74_RS02675 (STHERMO_0583) queA 506714..507757 (-) 1044 WP_011225639.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  H1W74_RS02680 (STHERMO_0584) - 507907..508608 (+) 702 WP_022096948.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64689.59 Da        Isoelectric Point: 5.7785

>NTDB_id=1010703 H1W74_RS02665 WP_011225637.1 503080..504816(+) (rcrP) [Streptococcus thermophilus isolate STH_CIRM_1047]
MSYIWSYLRRYPKWLAMNFTAAILFVIANLGMPTVLARMIDEGINRGDADKLYTYAWVMFGVVLTGIVGRVLLAYAVGKL
TTTMVQVMRNDIYAKLQEYSHHEYEQIGVSSLVTRITSDAFVLMQFADQVLKVGVITPLMMVSSVFLILTTSPSLAWIVA
ISLPLLAVVVWYVAVKTRPLSEKQQATLDKINQYARENLTGLRVIRAFAREDFQEKKFASENAVYADNSSKLFKLTGLTE
PLFVQIIIAMIVAIVWFALNPLGSGTLAIGDLVAFIEYSFHALLSFLFLANLFTMYPRTAVSSERLQEIMDMPISINPNE
DGVTETDTKGYLEFDNVTFAYPGETESPVLHNISFKAKAGETIAFIGSTGSGKSSLVQLIPRFYDVTLGRILVDGVDVRD
YNLKALRRKIGFIPQKALLFTGTIGENIRYGKENASHEELNQATDVAQAKEFIESKEERYDSHLAEGGSNLSGGQKQRLS
IARAVVKRPDLYIFDDSFSALDYKTDATLRRRLKEVTQDATVLIVAQRVGTIMDADQIIVLDKGEIVGRGRHEELMESNE
IYREIANSQLNQKSLTED

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=1010703 H1W74_RS02665 WP_011225637.1 503080..504816(+) (rcrP) [Streptococcus thermophilus isolate STH_CIRM_1047]
ATGTCTTATATTTGGTCTTATCTCAGGCGTTACCCTAAGTGGCTAGCGATGAATTTTACAGCAGCCATTTTATTTGTTAT
TGCTAACCTGGGTATGCCGACGGTTCTTGCTAGAATGATTGATGAGGGAATTAACCGTGGGGATGCTGACAAGCTTTATA
CCTATGCTTGGGTCATGTTTGGTGTGGTCTTAACTGGTATTGTTGGTCGTGTGCTTTTGGCCTATGCGGTTGGTAAGTTG
ACGACTACTATGGTGCAGGTCATGCGTAATGATATCTACGCCAAACTTCAGGAGTATTCACACCATGAGTACGAACAAAT
TGGGGTATCTTCTTTGGTGACTCGTATCACGTCGGATGCTTTTGTTCTCATGCAGTTTGCAGATCAAGTCCTCAAGGTGG
GTGTTATCACTCCTTTGATGATGGTTTCCAGTGTCTTTTTGATTTTGACGACAAGTCCATCTTTGGCTTGGATTGTGGCA
ATCTCCTTGCCTTTACTAGCTGTAGTTGTCTGGTATGTGGCGGTAAAAACGCGTCCGCTTTCTGAAAAGCAACAGGCAAC
TCTCGACAAGATTAACCAGTATGCTCGTGAAAATCTGACTGGACTTCGTGTCATCCGTGCTTTCGCTAGAGAAGATTTCC
AAGAGAAGAAGTTTGCCTCTGAAAATGCTGTCTATGCGGATAATTCAAGCAAGCTCTTTAAATTGACTGGTTTAACAGAG
CCACTTTTTGTACAAATTATCATCGCTATGATTGTGGCTATTGTTTGGTTTGCCCTAAATCCATTAGGTTCTGGAACTCT
GGCAATCGGGGACTTGGTTGCCTTCATTGAGTACAGTTTCCATGCACTATTATCCTTCCTCTTTCTAGCTAATCTCTTTA
CTATGTATCCTCGTACAGCGGTATCTAGTGAACGTCTGCAGGAAATTATGGATATGCCTATTTCTATCAACCCAAATGAA
GATGGGGTGACAGAGACTGATACTAAGGGATATTTGGAATTTGATAATGTGACCTTTGCCTATCCTGGTGAAACTGAGAG
TCCTGTTCTACACAATATTTCTTTTAAGGCTAAGGCAGGTGAAACTATTGCCTTTATTGGGTCTACGGGCTCAGGAAAAT
CATCACTTGTACAGTTGATTCCACGCTTTTATGATGTCACACTTGGACGTATTCTTGTGGATGGTGTGGATGTACGTGAC
TACAATCTTAAGGCTCTTCGTCGTAAGATTGGCTTTATTCCACAAAAAGCTCTACTCTTTACTGGAACTATCGGTGAAAA
TATCCGTTATGGTAAGGAAAATGCTAGTCATGAAGAATTGAATCAAGCTACGGACGTGGCTCAGGCTAAGGAATTTATTG
AAAGCAAGGAAGAACGCTATGATTCTCACTTGGCTGAGGGTGGTAGCAACCTTTCTGGGGGACAGAAGCAGCGTTTGTCA
ATTGCACGTGCGGTGGTTAAACGTCCTGATCTCTATATCTTTGATGATTCCTTCTCTGCCTTGGACTACAAGACTGATGC
GACTTTGCGCCGTCGTCTAAAAGAAGTGACTCAGGATGCGACGGTCTTGATCGTGGCTCAACGTGTGGGAACCATTATGG
ATGCAGATCAGATTATCGTTCTTGATAAGGGTGAAATTGTTGGTCGTGGCCGTCACGAAGAGCTCATGGAAAGTAATGAG
ATTTACCGTGAGATTGCTAATTCACAATTGAATCAAAAGAGTCTTACAGAAGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(17-279)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M5F0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.189

91.696

0.369