Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   H1W95_RS07870 Genome accession   NZ_LR822030
Coordinates   1530494..1531237 (-) Length   247 a.a.
NCBI ID   WP_011681551.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1046     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1525494..1536237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W95_RS07840 (STHERMO_1762) - 1525765..1526709 (-) 945 WP_011226463.1 TIGR01212 family radical SAM protein -
  H1W95_RS07845 (STHERMO_1763) sepM 1526794..1527870 (-) 1077 WP_011681549.1 SepM family pheromone-processing serine protease Regulator
  H1W95_RS07850 (STHERMO_1764) coaD 1527848..1528345 (-) 498 WP_011681550.1 pantetheine-phosphate adenylyltransferase -
  H1W95_RS07855 (STHERMO_1765) rsmD 1528379..1528978 (-) 600 Protein_1513 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  H1W95_RS07860 (STHERMO_1766) trxB 1529069..1530022 (-) 954 WP_259699870.1 thioredoxin-disulfide reductase -
  H1W95_RS07865 (STHERMO_1767) - 1530055..1530279 (-) 225 WP_180483378.1 DUF4059 family protein -
  H1W95_RS07870 (STHERMO_1768) amiE 1530494..1531237 (-) 744 WP_011681551.1 amino acid ABC transporter ATP-binding protein Regulator
  H1W95_RS07875 (STHERMO_1769) - 1531237..1531983 (-) 747 WP_095559509.1 amino acid ABC transporter permease -
  H1W95_RS07880 (STHERMO_1770) - 1532379..1533209 (-) 831 WP_014727671.1 transporter substrate-binding domain-containing protein -
  H1W95_RS07885 (STHERMO_1772) - 1533669..1533902 (-) 234 WP_002947030.1 hypothetical protein -
  H1W95_RS07890 (STHERMO_1773) dinB 1534200..1535303 (-) 1104 WP_014608654.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27661.80 Da        Isoelectric Point: 5.7813

>NTDB_id=1010641 H1W95_RS07870 WP_011681551.1 1530494..1531237(-) (amiE) [Streptococcus thermophilus isolate STH_CIRM_1046]
MISIKNVTKEFSGQKVLDGIDIDIEKGEVVALVGASGAGKSTILRCLNYLEQPDSGTIAIDDFKVDFGTITKEQILTLRR
KLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDEEATKIAKEELAKVGLSNRENYYPRHLSGGQKQRVALARALAMRPDV
LLLDEPTSALDPELVGEVEKSIVDAAKSGQTMILVSHDMNFIYQVADKVLFLEKGHILEQGTPDEIFNHPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=1010641 H1W95_RS07870 WP_011681551.1 1530494..1531237(-) (amiE) [Streptococcus thermophilus isolate STH_CIRM_1046]
ATGATTAGTATCAAAAATGTGACCAAGGAATTTTCAGGACAAAAGGTTCTAGATGGCATCGATATTGACATTGAAAAAGG
TGAAGTTGTGGCTCTTGTTGGTGCCTCTGGTGCAGGGAAGTCGACTATCCTTCGTTGCTTGAACTATTTGGAACAACCTG
ATTCTGGTACTATTGCCATTGATGATTTCAAGGTGGATTTTGGAACAATTACCAAGGAGCAAATCCTTACCCTTCGCCGT
AAGTTGGCTATGGTTTTCCAACAGTTTAACCTCTTTGAACGTCGTACAGCCTTGGATAATGTTAAGGAAGGTCTTAAGAT
TGTTAAGAAACTTTCTGACGAAGAAGCTACCAAGATTGCGAAAGAAGAGCTCGCTAAGGTTGGGCTTTCTAATCGTGAAA
ATTACTACCCACGTCACTTGTCGGGTGGTCAAAAGCAACGTGTGGCTTTGGCTCGTGCCCTTGCAATGAGGCCTGATGTG
CTCTTGCTTGACGAACCAACATCTGCCCTTGACCCTGAGTTGGTTGGTGAGGTTGAAAAATCAATCGTAGATGCGGCTAA
ATCAGGTCAAACCATGATTTTGGTCAGTCACGACATGAACTTTATTTATCAAGTGGCTGACAAGGTGCTTTTCCTTGAAA
AAGGTCATATCCTTGAACAAGGAACACCTGATGAAATCTTTAACCATCCAAAAGAAGAGCGAACAAAAGAATTCTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.962

100

0.364

Multiple sequence alignment