Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ABOD76_RS19405 Genome accession   NZ_CP158299
Coordinates   2873923..2874534 (+) Length   203 a.a.
NCBI ID   WP_350243598.1    Uniprot ID   A0AAU7UAS3
Organism   Deinococcus sonorensis KR-87     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2868923..2879534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABOD76_RS19380 (ABOD76_19325) - 2868925..2869698 (+) 774 WP_350243593.1 DUF554 domain-containing protein -
  ABOD76_RS19385 (ABOD76_19330) - 2869833..2871074 (+) 1242 WP_350243594.1 aminopeptidase -
  ABOD76_RS19390 (ABOD76_19335) - 2871133..2872980 (-) 1848 WP_350243595.1 menaquinone biosynthesis decarboxylase -
  ABOD76_RS19395 (ABOD76_19340) - 2873065..2873358 (-) 294 WP_350243596.1 cupin domain-containing protein -
  ABOD76_RS19400 (ABOD76_19345) - 2873625..2873921 (+) 297 WP_350243597.1 YbaB/EbfC family nucleoid-associated protein -
  ABOD76_RS19405 (ABOD76_19350) recR 2873923..2874534 (+) 612 WP_350243598.1 recombination mediator RecR Machinery gene
  ABOD76_RS19410 (ABOD76_19355) - 2874614..2874964 (+) 351 WP_350243599.1 roadblock/LC7 domain-containing protein -
  ABOD76_RS19415 (ABOD76_19360) - 2874961..2875326 (+) 366 WP_350243600.1 roadblock/LC7 domain-containing protein -
  ABOD76_RS19420 (ABOD76_19365) - 2875326..2875631 (+) 306 WP_350243601.1 roadblock/LC7 domain-containing protein -
  ABOD76_RS19425 (ABOD76_19370) mqnC 2875694..2876846 (-) 1153 Protein_2778 cyclic dehypoxanthinyl futalosine synthase -
  ABOD76_RS19430 (ABOD76_19375) - 2876891..2877181 (-) 291 WP_350243602.1 hypothetical protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22142.53 Da        Isoelectric Point: 5.6974

>NTDB_id=1010492 ABOD76_RS19405 WP_350243598.1 2873923..2874534(+) (recR) [Deinococcus sonorensis KR-87]
MKYPPSLVALIRELSRLPGIGPKSAQRLAFHLFEQPREDIERLSSALLEAKRDLHTCPICFNITDADVCDVCSDPSRDRT
LICVVEEPGDVIAIERSGEYQGLYHVLHGVISPMNGVGPERLYIKPLLPRLSEAREVILATGTTVEGEATALYLQRLIEP
LGVTVSRIAYGLPVGGALEYADEVTLGRALSGRQTIANRGPAK

Nucleotide


Download         Length: 612 bp        

>NTDB_id=1010492 ABOD76_RS19405 WP_350243598.1 2873923..2874534(+) (recR) [Deinococcus sonorensis KR-87]
ATGAAGTACCCACCGAGCCTCGTGGCCCTGATCCGCGAACTGTCCCGGCTGCCGGGCATCGGCCCCAAGAGTGCCCAGCG
GCTGGCCTTTCACCTGTTTGAGCAGCCGCGCGAGGACATCGAGCGCCTGTCCAGCGCCCTGCTGGAAGCCAAGCGGGACC
TGCACACCTGCCCGATCTGCTTCAACATCACCGACGCCGACGTGTGCGACGTGTGCAGCGATCCCAGCCGCGACCGGACG
CTGATCTGCGTGGTTGAGGAGCCGGGCGACGTGATCGCCATCGAGCGCAGCGGCGAGTACCAGGGGCTGTATCACGTGCT
GCACGGCGTAATCTCACCCATGAACGGTGTGGGGCCGGAGCGGCTGTACATCAAGCCGCTGCTGCCGCGCCTGAGTGAGG
CCCGCGAGGTCATCCTGGCCACCGGCACCACCGTGGAGGGCGAGGCCACCGCGCTGTATCTGCAGCGGCTGATCGAGCCG
CTGGGCGTGACTGTCTCGCGCATCGCCTATGGTCTGCCGGTGGGCGGCGCGCTGGAATACGCCGACGAGGTCACGCTGGG
CCGCGCCCTCTCGGGACGGCAGACCATCGCCAATCGGGGTCCGGCCAAGTAA

Domains

Predicted by InterproScan.

Toprim domain (Toprim_4)

(82-169)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

82.266

100

0.823

Multiple sequence alignment