Detailed information NTG1010478

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABOD76_RS07365
• Genome accession: NZ_CP158299
• Coordinates: 403344..404477 (-)
• Length: 377 a.a.
• NCBI ID: WP_350244156.1
• Uniprot ID: A0AAU7UCI9
• Organism: Deinococcus sonorensis KR-87
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 398344..409477

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABOD76_RS07335 (ABOD76_07300)	-	398376..398753 (+)	378	WP_350244149.1	succinate dehydrogenase hydrophobic membrane anchor subunit	-
ABOD76_RS07340 (ABOD76_07305)	sdhA	398788..400536 (+)	1749	WP_350244150.1	succinate dehydrogenase flavoprotein subunit	-
ABOD76_RS07345 (ABOD76_07310)	-	400654..401361 (+)	708	WP_350244152.1	succinate dehydrogenase iron-sulfur subunit	-
ABOD76_RS07350 (ABOD76_07315)	-	401421..401903 (-)	483	WP_350244153.1	hypothetical protein	-
ABOD76_RS07355 (ABOD76_07320)	-	401991..402350 (+)	360	WP_350244154.1	MGMT family protein	-
ABOD76_RS07360 (ABOD76_07325)	-	402489..403280 (+)	792	WP_350244155.1	ABC transporter substrate-binding protein	-
ABOD76_RS07365 (ABOD76_07330)	pilD	403344..404477 (-)	1134	WP_350244156.1	prepilin peptidase	Machinery gene
ABOD76_RS07370 (ABOD76_07335)	-	404528..405493 (-)	966	WP_350244157.1	GNAT family N-acetyltransferase	-
ABOD76_RS07375 (ABOD76_07340)	-	405496..406440 (-)	945	WP_350244158.1	GNAT family N-acetyltransferase	-
ABOD76_RS07380 (ABOD76_07345)	-	406437..407453 (-)	1017	WP_350244159.1	GNAT family N-acetyltransferase	-
ABOD76_RS07385 (ABOD76_07350)	-	407477..408889 (-)	1413	WP_350244161.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 39998.42 Da
• Isoelectric Point: 6.6951

>NTDB_id=1010478 ABOD76_RS07365 WP_350244156.1 403344..404477(-) (pilD) [Deinococcus sonorensis KR-87]
MIPDALMIVVATVLGLLIGSFSNVLIWRLPRHESVNFPPSHCPNCDHALAPLDLVPVLSWVALGGRCRYCRAPISPRYPV
IELITGLAYGLLAWAFPYSQVGASLLGLGLLFTLLLVASVIDQGTYTIPDELTLPGAALGLLFGLVNARTGADATGLPVF
AEALRGMLLGAGLLITIDLLGSWVLRRFRERSFPEYPLGYQQIAVSLLVGAWLGVGWGLGAGLLSAALNLLLKRTLRVPE
LLTLGGVLVSLALGSAGYGPGLILMVQGALAAAGAMSLVCGVYWWTRPDDDSEDYDPSAMGFGDVKLAAVIGAFLGWERL
LVAVVVAVVAGALLGLLQRLIWRENRLKFGPYLALGALVALFWGEGLVRAYLGYLGL

Nucleotide

• Length: 1134 bp

>NTDB_id=1010478 ABOD76_RS07365 WP_350244156.1 403344..404477(-) (pilD) [Deinococcus sonorensis KR-87]
GTGATCCCGGACGCCCTGATGATCGTTGTGGCCACCGTGCTGGGGCTGCTGATCGGCTCGTTCTCGAACGTGCTGATCTG
GCGGCTTCCCCGGCACGAGAGCGTCAATTTTCCGCCGTCTCACTGCCCGAACTGCGACCATGCCCTGGCGCCGCTGGACC
TGGTGCCGGTGCTGTCGTGGGTGGCGCTGGGCGGCCGCTGCCGCTACTGCCGCGCCCCGATCAGCCCGCGCTACCCGGTC
ATCGAGCTGATCACCGGGCTGGCATACGGCCTGCTGGCGTGGGCTTTCCCGTACTCGCAGGTGGGCGCCAGCCTGCTGGG
CCTGGGCCTGCTGTTCACGCTGCTGCTGGTCGCCTCGGTCATTGACCAGGGCACCTACACCATCCCCGACGAGCTGACCC
TGCCGGGCGCCGCGCTGGGCCTGCTGTTCGGGCTGGTCAACGCCCGCACCGGGGCCGACGCCACCGGCCTCCCGGTGTTC
GCCGAGGCGCTGCGCGGCATGCTGCTGGGCGCCGGCCTGCTGATCACCATTGACCTGCTGGGCTCCTGGGTGCTGCGCCG
CTTCCGCGAGCGCTCGTTCCCCGAGTATCCGCTGGGGTATCAGCAGATCGCGGTGTCGCTGCTGGTGGGCGCGTGGCTGG
GGGTCGGCTGGGGCCTGGGCGCCGGGCTGCTGAGCGCGGCCCTGAACCTGCTGCTGAAACGCACCCTGCGCGTGCCGGAA
CTGCTGACGCTGGGCGGCGTGCTGGTCAGCCTGGCGCTCGGCTCGGCCGGCTACGGCCCCGGCCTGATCCTGATGGTGCA
GGGCGCCCTGGCCGCCGCCGGAGCGATGAGCCTGGTGTGCGGCGTGTACTGGTGGACCCGCCCGGACGACGACAGCGAGG
ACTACGACCCCTCCGCGATGGGCTTCGGCGACGTGAAGCTGGCCGCCGTGATCGGCGCGTTTCTGGGGTGGGAGCGGCTG
CTGGTGGCGGTGGTGGTGGCGGTGGTGGCCGGCGCGCTGCTAGGGCTGCTGCAGCGGCTGATCTGGCGTGAGAACCGGCT
GAAGTTCGGTCCGTATCTGGCGCTGGGCGCCCTGGTGGCGCTGTTCTGGGGCGAGGGGCTGGTGCGCGCCTACCTGGGGT
ACCTGGGGCTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-96)

• Type IV leader peptidase family (Peptidase_A24) (234-336)

• Type IV leader peptidase family (Peptidase_A24) (110-229)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	64.433	100	0.663