Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   H1X63_RS09855 Genome accession   NZ_LR822027
Coordinates   1895402..1896670 (-) Length   422 a.a.
NCBI ID   WP_179972392.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_998     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1890402..1901670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X63_RS09825 (STHERMO_2158) - 1890443..1890877 (-) 435 WP_002948621.1 low molecular weight protein-tyrosine-phosphatase -
  H1X63_RS09830 (STHERMO_2159) - 1891159..1892451 (-) 1293 WP_179972390.1 adenylosuccinate synthase -
  H1X63_RS10945 - 1892704..1893112 (-) 409 Protein_1876 DNA topology modulation protein FlaR -
  H1X63_RS09835 (STHERMO_2162) - 1893196..1894371 (+) 1176 WP_180487769.1 IS256-like element IS1191 family transposase -
  H1X63_RS09840 - 1894406..1894913 (-) 508 Protein_1878 DNA topology modulation protein -
  H1X63_RS09855 (STHERMO_2165) rarA 1895402..1896670 (-) 1269 WP_179972392.1 replication-associated recombination protein A Machinery gene
  H1X63_RS09860 (STHERMO_2166) rpmB 1896840..1897028 (+) 189 WP_179972393.1 50S ribosomal protein L28 -
  H1X63_RS09865 (STHERMO_2167) - 1897155..1897421 (+) 267 WP_002952186.1 IreB family regulatory phosphoprotein -
  H1X63_RS09870 (STHERMO_2168) ruvX 1897421..1897840 (+) 420 WP_011681732.1 Holliday junction resolvase RuvX -
  H1X63_RS09875 (STHERMO_2169) - 1897949..1898254 (+) 306 WP_011681733.1 DUF1292 domain-containing protein -
  H1X63_RS09880 (STHERMO_2170) - 1898356..1899605 (-) 1250 Protein_1884 ISL3 family transposase -
  H1X63_RS09890 (STHERMO_2171) - 1899886..1901532 (+) 1647 WP_100284808.1 hypothetical protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46474.05 Da        Isoelectric Point: 6.8977

>NTDB_id=1010458 H1X63_RS09855 WP_179972392.1 1895402..1896670(-) (rarA) [Streptococcus thermophilus isolate STH_CIRM_998]
MPDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLGDKERGFAFEVHLDDDALDFIATATNGDLRLAYNSLDLAVMSTPASGNGQHHITLDIVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAVLADLRKSGNLPIPRHLRDGHYAGSKALGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=1010458 H1X63_RS09855 WP_179972392.1 1895402..1896670(-) (rarA) [Streptococcus thermophilus isolate STH_CIRM_998]
ATGCCAGATAATCTTGCCTTACGCATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAACATTTAGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGATAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTCTAGATGAGATCCATCGTTTGGATAAAGCAAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCGTTTTTTTCTG
TAACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTGGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGGGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATTGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGGCAGC
ATCATATTACTTTAGACATAGTGGAAAATAGCTTACAACGCAGTTATATTACTATGGATAAAGACGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTGATGTTAATGCCAGTCTTCACTATGCGGCACGTTTGGTTGA
GGCAGGGGATTTGCCTAGTCTAGCACGTCGCTTGACTGTGATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGTCCTGGCGGATCTTAGAAAGTCTGG
GAATTTACCTATTCCGCGTCATCTGAGAGATGGACACTATGCTGGAAGTAAGGCACTGGGTAATGCACAAGATTATAAGT
ATCCACATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCAGATAAATTAAGAGGAGTCAATTATTTCCAACCT
AATGAAACTGGGAAATACGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.189

99.289

0.588