Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   H1X63_RS09325 Genome accession   NZ_LR822027
Coordinates   1805888..1806181 (-) Length   97 a.a.
NCBI ID   WP_179972344.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_998     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1800888..1811181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X63_RS09295 (STHERMO_2038) - 1801265..1801927 (-) 663 WP_179972338.1 CPBP family intramembrane glutamic endopeptidase -
  H1X63_RS11290 (STHERMO_2040) - 1802024..1802465 (-) 442 Protein_1773 CAAX protease -
  H1X63_RS09300 (STHERMO_2041) - 1802477..1802674 (-) 198 WP_179972339.1 helix-turn-helix transcriptional regulator -
  H1X63_RS09305 (STHERMO_2042) - 1802922..1804115 (-) 1194 WP_179972340.1 acetate kinase -
  H1X63_RS09310 (STHERMO_2043) comGH 1804171..1805127 (-) 957 WP_179972341.1 class I SAM-dependent methyltransferase Machinery gene
  H1X63_RS09315 (STHERMO_2044) comGG 1805178..1805489 (-) 312 WP_179972342.1 competence type IV pilus minor pilin ComGG Machinery gene
  H1X63_RS09320 (STHERMO_2045) comGF 1805467..1805904 (-) 438 WP_179972343.1 competence type IV pilus minor pilin ComGF Machinery gene
  H1X63_RS09325 (STHERMO_2046) comGE 1805888..1806181 (-) 294 WP_179972344.1 competence type IV pilus minor pilin ComGE Machinery gene
  H1X63_RS09330 (STHERMO_2047) comGD 1806153..1806581 (-) 429 WP_269473123.1 competence type IV pilus minor pilin ComGD Machinery gene
  H1X63_RS09335 (STHERMO_2048) comGC 1806541..1806867 (-) 327 WP_179972346.1 competence type IV pilus major pilin ComGC Machinery gene
  H1X63_RS09340 (STHERMO_2049) comGB 1806864..1807964 (-) 1101 WP_179973355.1 competence type IV pilus assembly protein ComGB Machinery gene
  H1X63_RS09345 (STHERMO_2050) comGA/cglA/cilD 1807846..1808787 (-) 942 WP_179972347.1 competence type IV pilus ATPase ComGA Machinery gene
  H1X63_RS09350 (STHERMO_2051) - 1808868..1809230 (-) 363 WP_179972348.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10830.71 Da        Isoelectric Point: 10.4561

>NTDB_id=1010451 H1X63_RS09325 WP_179972344.1 1805888..1806181(-) (comGE) [Streptococcus thermophilus isolate STH_CIRM_998]
MVNIKRRSLRGYILIESLVAMAVLVLVSSLILEQINTNRRLMADNLHQQDVLSVATMAVQTKQDQLTLNGIAVTVKRSQQ
GITVYESGKEIIHVSKQ

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1010451 H1X63_RS09325 WP_179972344.1 1805888..1806181(-) (comGE) [Streptococcus thermophilus isolate STH_CIRM_998]
GTGGTAAATATAAAAAGACGATCTCTTAGAGGATATATTCTTATTGAAAGCCTGGTAGCTATGGCTGTTTTAGTACTTGT
CAGCAGTCTGATATTGGAACAAATTAATACCAACCGCAGACTAATGGCTGATAATCTCCATCAACAAGATGTCTTGAGTG
TGGCAACAATGGCAGTTCAGACCAAGCAAGACCAGTTAACGCTAAATGGCATAGCGGTGACAGTTAAACGTAGCCAGCAA
GGTATCACGGTTTATGAATCGGGAAAGGAGATTATTCATGTATCTAAGCAGTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

42.268

100

0.423
  comGE Streptococcus mutans UA159

42.268

100

0.423