Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   ABE953_RS07715 Genome accession   NZ_CP158282
Coordinates   1622232..1623062 (-) Length   276 a.a.
NCBI ID   WP_003709392.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain LZZAY01     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1617232..1628062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE953_RS07695 (ABE953_07705) - 1618363..1619319 (+) 957 WP_223687095.1 DhaKLM operon coactivator DhaQ -
  ABE953_RS07700 (ABE953_07710) dhaS 1619320..1619844 (-) 525 WP_003704309.1 dihydroxyacetone kinase transcriptional activator DhaS -
  ABE953_RS07705 (ABE953_07715) brnQ 1619990..1621372 (-) 1383 WP_410504568.1 branched-chain amino acid transport system II carrier protein -
  ABE953_RS07710 (ABE953_07720) - 1621911..1622177 (+) 267 WP_003701014.1 hypothetical protein -
  ABE953_RS07715 (ABE953_07725) endA 1622232..1623062 (-) 831 WP_003709392.1 DNA/RNA non-specific endonuclease Machinery gene
  ABE953_RS07720 (ABE953_07730) - 1623431..1624033 (+) 603 WP_003701011.1 nitroreductase family protein -
  ABE953_RS07725 (ABE953_07735) - 1624086..1626017 (-) 1932 WP_318175127.1 heavy metal translocating P-type ATPase -
  ABE953_RS07730 (ABE953_07740) - 1626140..1626481 (+) 342 WP_044005624.1 ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 276 a.a.        Molecular weight: 30410.73 Da        Isoelectric Point: 10.4970

>NTDB_id=1010387 ABE953_RS07715 WP_003709392.1 1622232..1623062(-) (endA) [Ligilactobacillus salivarius strain LZZAY01]
MARKKKNKSNKFMRWLATVAVGVALAAVGVNTNHISTPFNNEVASSSTYNKKDYTPTEEQASVVLTDNVRQQLGGNLSFN
GAGAFIVNNNKTNLNTKVSSAPYAVNEVDSLNRPTVANAWLNRTSRQYKNRQATGNGRTSWKPQGFRQVQNLPGRFKHAY
DRGHLLAYALVGNVRGFDASESNEKNIATQTAWANESASKDSTGQNYYEGLVRKALDRNKQVRYRVTDVYDGNNLVPAGA
HLEAKSSDGSLEFNVFVPNVQTNININYATGQATRK

Nucleotide


Download         Length: 831 bp        

>NTDB_id=1010387 ABE953_RS07715 WP_003709392.1 1622232..1623062(-) (endA) [Ligilactobacillus salivarius strain LZZAY01]
ATGGCAAGAAAAAAGAAAAATAAATCAAATAAATTTATGAGATGGTTAGCTACCGTTGCTGTAGGGGTTGCTTTAGCAGC
AGTAGGGGTTAATACAAATCATATTAGTACACCATTTAATAATGAGGTTGCAAGTAGTAGTACATATAACAAAAAGGATT
ACACTCCTACTGAGGAACAAGCAAGTGTAGTATTAACAGATAATGTACGCCAACAATTAGGTGGTAATTTAAGCTTTAAT
GGGGCAGGAGCTTTCATTGTAAATAATAATAAGACTAACTTAAATACAAAAGTTTCTAGTGCACCATATGCTGTTAATGA
GGTTGATTCATTGAATCGACCAACCGTTGCGAATGCTTGGCTAAATAGAACTAGTCGTCAATATAAAAATCGTCAAGCTA
CAGGAAATGGACGTACAAGTTGGAAGCCACAAGGATTTAGACAGGTACAAAACTTACCAGGTAGATTCAAGCATGCTTAT
GATAGAGGACATTTATTAGCATATGCGCTTGTGGGAAATGTTAGAGGGTTTGATGCTTCTGAATCTAATGAAAAGAATAT
AGCCACTCAAACTGCATGGGCTAATGAATCAGCTTCTAAGGATTCTACCGGACAAAATTACTACGAAGGATTGGTAAGAA
AAGCTTTAGATAGAAATAAGCAGGTTCGTTATCGTGTGACAGATGTCTATGATGGTAATAATCTAGTGCCAGCAGGAGCA
CATTTGGAAGCTAAATCATCAGATGGTTCGCTAGAATTTAATGTATTTGTGCCTAATGTACAAACTAACATAAATATTAA
TTATGCTACAGGACAAGCTACTAGGAAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(83-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

60.538

80.797

0.489
  endA Streptococcus pneumoniae D39

60.538

80.797

0.489
  endA Streptococcus pneumoniae R6

60.538

80.797

0.489
  endA Streptococcus pneumoniae TIGR4

60.538

80.797

0.489

Multiple sequence alignment