Detailed information NTG1010332

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: H1W98_RS09025
• Genome accession: NZ_LR822026
• Coordinates: 1759258..1761762 (+)
• Length: 834 a.a.
• NCBI ID: WP_180482383.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus isolate STH_CIRM_967
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1754258..1766762

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1W98_RS09005 (STHERMO_2060)	-	1756494..1757036 (-)	543	WP_100273142.1	CvpA family protein	-
H1W98_RS09010 (STHERMO_2061)	-	1757033..1757350 (-)	318	WP_003096030.1	hypothetical protein	-
H1W98_RS09015 (STHERMO_2062)	rnhC	1757664..1758554 (+)	891	WP_179972284.1	ribonuclease HIII	-
H1W98_RS09020 (STHERMO_2063)	lepB	1758573..1759196 (+)	624	WP_179972285.1	signal peptidase I	-
H1W98_RS09025 (STHERMO_2064)	recD/recD2/recDB	1759258..1761762 (+)	2505	WP_180482383.1	ATP-dependent RecD-like DNA helicase	Machinery gene
H1W98_RS09030 (STHERMO_2065)	-	1761818..1762144 (-)	327	WP_179973035.1	AzlD domain-containing protein	-
H1W98_RS09035 (STHERMO_2066)	-	1762131..1762829 (-)	699	WP_415669290.1	AzlC family ABC transporter permease	-
H1W98_RS09040 (STHERMO_2067)	tsaD	1762875..1763888 (-)	1014	WP_179972287.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
H1W98_RS09045 (STHERMO_2068)	rimI	1763888..1764301 (-)	414	WP_014621963.1	ribosomal protein S18-alanine N-acetyltransferase	-
H1W98_RS09050 (STHERMO_2069)	tsaB	1764303..1764989 (-)	687	WP_002947108.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
H1W98_RS09055 (STHERMO_2070)	-	1765252..1765482 (+)	231	WP_002947111.1	DNA-dependent RNA polymerase subunit epsilon	-

Sequence

Protein

• Length: 834 a.a.
• Molecular weight: 94228.68 Da
• Isoelectric Point: 4.6095

>NTDB_id=1010332 H1W98_RS09025 WP_180482383.1 1759258..1761762(+) (recD/recD2/recDB) [Streptococcus thermophilus isolate STH_CIRM_967]
MQEFYFSGTIERIIFENTSNFFRILLLEIDETDSDFEDYEIIVTGTMGDVMEGGDYTFWGQLTNHPKYGKQLQMTRYERS
KPSASGLIKYFSSDNFKGIGKKTAERIVEIYGEDPIDKILEDPSKLEQIPNLSKVNREAFLAKLKMNYGTEQILSKLSSY
GLTPKAASQIFNQYKEESLNLIEKYPYLLVEEVQGIGFKMADQLAERLGIASDAPERLRAALINCLLETSMEEGDTYIEA
KSLLERTIILLESSRQIELDPALVAHQLTHLIQEDKVQNIETRIFDNTLYFAEQGIYTHLTRIIKDQPDISAEDKIQASL
ERVEEELDITYDKVQKDAIIKALQSKVFILTGGPGTGKTTVINGIIKTYADLHGLDLKKSDLPIILAAPTGRAARRMNEL
TKLPSATIHRHLGLNGEDDFKTLDDYLDCDLIIIDEFSMVDTWLANQLFESISDTTQVIIVGDQDQLPSVGPGQVLADLL
QIDDLPKVSLTKIFRQSEDSTIVTLASQMRQGQLPTDFTEKKADRSYFEANANHIPQMIPKIVSAAIKSGIAAQDVQILA
PMYRGQAGINNLNTIMQDLLNPKEKANQFAFNDIFFRKNDKILHLVNDTELNVFNGDIGIITDLIPGKYTESKQDEIYMS
FDGNEVIYPRNEWNKITLAYAMSIHKSQGSEFPVVILPITRQSGRMLQRNLIYTAITRAKSKLVMLGEIAAFDYAVHNEG
AKRNTYLIQRFEQTYTQVVDKSVEKNVKNEGTDASNQTERKNSSPSETIENKGFSENINPSQTLINTYSHPVDKSVNKPV
QTEENYRLTEENWATIDPMIGLSEDDIAAFFNNN

Nucleotide

• Length: 2505 bp

>NTDB_id=1010332 H1W98_RS09025 WP_180482383.1 1759258..1761762(+) (recD/recD2/recDB) [Streptococcus thermophilus isolate STH_CIRM_967]
ATGCAAGAATTTTATTTTTCAGGAACTATCGAGCGCATCATTTTTGAAAATACCAGTAATTTTTTTCGTATCCTACTCTT
AGAAATTGATGAAACTGACAGTGATTTTGAAGACTATGAAATCATTGTTACTGGAACTATGGGGGATGTCATGGAGGGGG
GAGACTACACCTTCTGGGGTCAGCTAACCAATCACCCCAAATATGGCAAACAACTCCAAATGACTCGCTACGAGCGTTCA
AAACCCTCAGCCAGTGGCCTTATCAAATATTTCTCCAGTGATAATTTCAAAGGAATCGGTAAGAAAACGGCCGAGCGTAT
TGTCGAGATTTATGGCGAAGACCCTATTGACAAGATTCTCGAAGACCCTAGTAAATTAGAGCAGATTCCTAATCTGTCCA
AGGTAAACCGAGAGGCCTTCCTTGCAAAATTAAAAATGAACTATGGTACTGAACAAATCTTGTCCAAACTTTCCAGCTAT
GGCCTCACACCAAAGGCTGCCTCACAAATTTTCAACCAATATAAGGAAGAATCACTTAACCTTATTGAAAAATATCCTTA
TCTCTTGGTAGAGGAAGTCCAGGGAATTGGATTTAAAATGGCCGATCAACTAGCCGAACGCCTAGGGATTGCTAGCGATG
CTCCTGAGCGTTTACGAGCCGCCCTAATTAACTGTCTGCTAGAAACTAGTATGGAAGAAGGGGACACCTACATCGAAGCC
AAGTCCTTGCTTGAACGGACTATCATTCTTTTGGAAAGTTCTCGCCAGATTGAACTTGACCCTGCCTTGGTTGCTCACCA
ATTAACCCACCTCATCCAAGAGGATAAGGTGCAAAATATAGAGACTAGAATTTTTGATAATACCCTATATTTTGCAGAAC
AGGGCATCTATACCCACCTAACTCGTATCATAAAAGACCAGCCTGACATCAGTGCTGAGGACAAAATCCAAGCAAGTCTT
GAAAGGGTGGAAGAGGAGCTTGATATCACCTATGATAAGGTTCAAAAAGATGCCATTATTAAAGCCCTACAAAGCAAGGT
CTTCATCCTGACAGGTGGTCCCGGAACAGGGAAAACCACTGTTATTAACGGAATTATTAAAACCTATGCTGACCTTCATG
GTTTAGACCTCAAAAAGTCTGATTTACCCATTATTTTAGCAGCACCAACGGGACGGGCTGCTCGTCGGATGAACGAACTG
ACCAAGCTCCCTAGTGCCACTATCCATAGACATTTGGGGCTTAATGGCGAGGACGATTTCAAGACCTTAGATGACTATCT
CGATTGCGATTTGATTATCATCGATGAGTTCTCTATGGTTGATACTTGGTTGGCCAATCAACTCTTCGAAAGCATTTCCG
ATACCACTCAAGTAATCATTGTAGGTGACCAAGATCAGCTACCTTCTGTAGGCCCTGGCCAAGTCTTAGCTGACCTTTTG
CAGATTGATGACTTGCCTAAGGTTTCCCTAACCAAAATTTTCAGACAATCTGAGGATTCCACTATTGTTACCTTAGCTAG
CCAGATGCGCCAAGGCCAACTACCCACTGATTTCACAGAGAAAAAAGCTGACCGATCATACTTTGAGGCTAATGCTAACC
ATATTCCACAGATGATCCCTAAAATTGTCTCTGCCGCTATTAAAAGTGGGATCGCTGCTCAGGATGTACAGATTCTGGCC
CCCATGTACCGGGGACAGGCTGGTATCAACAATCTCAATACCATTATGCAGGATCTACTTAATCCCAAAGAAAAAGCCAA
TCAATTTGCCTTTAATGATATTTTCTTCCGTAAGAATGACAAGATTCTCCACCTGGTCAACGATACAGAACTCAATGTCT
TCAATGGCGATATTGGAATCATTACTGATCTCATACCTGGTAAATATACTGAAAGTAAGCAAGACGAAATTTACATGTCC
TTCGATGGCAATGAGGTTATCTATCCTCGTAACGAATGGAATAAGATTACTCTGGCCTATGCCATGTCTATACACAAATC
CCAAGGGAGTGAATTCCCAGTCGTTATCCTTCCCATCACACGCCAAAGTGGGCGTATGCTGCAACGTAACCTCATCTACA
CCGCTATCACACGCGCCAAAAGTAAACTGGTCATGTTGGGGGAAATCGCAGCCTTCGATTATGCCGTTCACAACGAGGGG
GCCAAACGTAATACCTACCTCATCCAACGTTTTGAACAAACTTATACACAAGTTGTTGATAAGTCTGTCGAAAAGAATGT
TAAAAACGAGGGAACAGACGCATCCAATCAAACAGAAAGGAAAAATAGTAGCCCCTCAGAAACCATTGAAAACAAAGGCT
TCTCAGAAAATATCAATCCATCCCAAACTCTTATTAACACTTATTCACATCCTGTGGATAAGTCTGTTAACAAACCTGTG
CAAACAGAAGAAAACTATCGTTTAACTGAAGAAAATTGGGCAACTATCGATCCAATGATAGGTCTCAGCGAAGACGATAT
TGCAGCCTTTTTTAACAATAACTAA

Domains

Predicted by InterProScan.

• AAA domain (AAA_30) (331-524)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (659-705)

• Helix-hairpin-helix containing domain (HHH_RecD2) (147-237)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (572-638)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	45.114	89.568	0.404