Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   H1X08_RS10090 Genome accession   NZ_LR822025
Coordinates   1958633..1959901 (-) Length   422 a.a.
NCBI ID   WP_180482312.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_961     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1953633..1964901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X08_RS10060 (STHERMO_2305) - 1953673..1954107 (-) 435 WP_002948621.1 low molecular weight protein-tyrosine-phosphatase -
  H1X08_RS10065 (STHERMO_2306) - 1954389..1955681 (-) 1293 WP_179972390.1 adenylosuccinate synthase -
  H1X08_RS11060 - 1955934..1956342 (-) 409 Protein_1941 DNA topology modulation protein FlaR -
  H1X08_RS10070 (STHERMO_2309) - 1956426..1957601 (+) 1176 WP_179972979.1 IS256-like element IS1191 family transposase -
  H1X08_RS10075 - 1957636..1958143 (-) 508 Protein_1943 DNA topology modulation protein -
  H1X08_RS10090 (STHERMO_2312) rarA 1958633..1959901 (-) 1269 WP_180482312.1 replication-associated recombination protein A Machinery gene
  H1X08_RS10095 (STHERMO_2313) rpmB 1960071..1960259 (+) 189 WP_179972393.1 50S ribosomal protein L28 -
  H1X08_RS10100 (STHERMO_2314) - 1960386..1960652 (+) 267 WP_002952186.1 IreB family regulatory phosphoprotein -
  H1X08_RS10105 (STHERMO_2315) ruvX 1960652..1961071 (+) 420 WP_011681732.1 Holliday junction resolvase RuvX -
  H1X08_RS10110 (STHERMO_2316) - 1961180..1961485 (+) 306 WP_011681733.1 DUF1292 domain-containing protein -
  H1X08_RS10115 (STHERMO_2317) - 1961698..1963344 (+) 1647 WP_100284808.1 hypothetical protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46490.05 Da        Isoelectric Point: 6.8977

>NTDB_id=1010236 H1X08_RS10090 WP_180482312.1 1958633..1959901(-) (rarA) [Streptococcus thermophilus isolate STH_CIRM_961]
MPDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLVDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDIVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAVLADLRKSGNLPIPRHLRDGHYAGSKALGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=1010236 H1X08_RS10090 WP_180482312.1 1958633..1959901(-) (rarA) [Streptococcus thermophilus isolate STH_CIRM_961]
ATGCCAGATAATCTTGCCTTACGCATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAACATTTAGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGATAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTCTAGATGAGATCCATCGTTTGGATAAAGCAAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCGTTTTTTTCTG
TAACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTGGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGTGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATCGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGGCAGC
ATCATATTACTTTAGACATAGTGGAAAATAGCTTACAACGCAGTTATATTACTATGGATAAAGACGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTGATGTTAATGCCAGTCTTCACTATGCGGCACGTTTGGTTGA
GGCAGGGGATTTGCCTAGTCTAGCACGTCGCTTGACTGTGATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGTCCTGGCGGATCTTAGAAAGTCTGG
GAATTTACCTATTCCGCGTCATCTGAGAGATGGACACTATGCTGGAAGTAAGGCACTGGGTAATGCACAAGATTATAAGT
ATCCACATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCAGATAAATTAAGAGGAGTCAATTATTTCCAACCT
AATGAAACTGGGAAATACGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.427

99.289

0.59